Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QWY21_RS02320 Genome accession   NZ_CP129236
Coordinates   432266..433216 (+) Length   316 a.a.
NCBI ID   WP_300987033.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427266..438216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS02305 (QWY21_02305) hflX 427560..428831 (+) 1272 WP_300987030.1 GTPase HflX -
  QWY21_RS02310 (QWY21_02310) - 429311..431029 (-) 1719 WP_300987031.1 ABC transporter ATP-binding protein -
  QWY21_RS02315 (QWY21_02315) - 431163..432044 (+) 882 WP_300987032.1 DUF6612 family protein -
  QWY21_RS02320 (QWY21_02320) ceuB 432266..433216 (+) 951 WP_300987033.1 ABC transporter permease Machinery gene
  QWY21_RS02325 (QWY21_02325) - 433209..434159 (+) 951 WP_300987034.1 iron chelate uptake ABC transporter family permease subunit -
  QWY21_RS02330 (QWY21_02330) - 434156..434917 (+) 762 WP_300987035.1 ABC transporter ATP-binding protein -
  QWY21_RS02335 (QWY21_02335) - 434936..435880 (+) 945 WP_300987036.1 siderophore ABC transporter substrate-binding protein -
  QWY21_RS02340 (QWY21_02340) - 435898..436206 (+) 309 WP_300987037.1 antibiotic biosynthesis monooxygenase -
  QWY21_RS02345 (QWY21_02345) - 436557..437624 (+) 1068 WP_300987038.1 ABC transporter permease -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34785.00 Da        Isoelectric Point: 9.9923

>NTDB_id=851742 QWY21_RS02320 WP_300987033.1 432266..433216(+) (ceuB) [Planococcus sp. N022]
MKKRYLIPALIILSFVSLFIGVSSISVTDLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTLAFAFALAGTFLFMQILNRIKFKDAIFIPLIGMMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMIMKGSYELLYISVPVFVIAYLYANRFTVAGMGEDFSKNLGLKYRSVVNIGLVLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLLCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFGRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=851742 QWY21_RS02320 WP_300987033.1 432266..433216(+) (ceuB) [Planococcus sp. N022]
ATGAAAAAACGTTATTTAATTCCAGCATTGATCATACTGTCATTTGTCTCCTTGTTTATCGGAGTCAGCAGTATCAGCGT
TACCGATCTGCTAGATTTCCAATCTGAAGAAACACAAATTTTCCTCATCAGCCGCCTGCCGCGGCTGGTAGCGATTTTGC
TTGCGGGGGCTGGCATGAGTATGGCAGGACTCATTATGCAGCAGTTAAGCCGCAACAAATTTGTGTCTCCAACAACCGCA
GGTACACTTGACGCCACTCGTCTTGGGATTCTTGTTTCGATGTTATTGTTTGCCAATGCATCGATGCTTGAAAAAATGAC
GCTGGCGTTCGCTTTTGCACTTGCGGGGACTTTCCTCTTTATGCAAATTCTTAACCGCATCAAATTCAAAGATGCTATAT
TCATCCCGCTCATCGGGATGATGTTCGGTAATATTTTATCGTCCATTACAACCTTTTTTGCATACCGTGCAGATGTGATC
CAAAACATGTCTGCTTGGCTGCAAGGCGACTTTTCGATGATCATGAAAGGAAGCTACGAGCTGCTGTACATCAGTGTTCC
GGTCTTTGTCATCGCGTACCTTTATGCTAACCGCTTTACGGTTGCGGGGATGGGTGAGGATTTCTCGAAAAACTTGGGGC
TGAAATACCGAAGTGTGGTTAATATCGGATTGGTGCTGGTCGCACTGATCACGGCTACAGTTGTGCTTACGGTAGGAGTC
ATTCCGTTTCTCGGGTTGATCATCCCGAATATTGTTTCCATTTTCAAAGGTGATCATTTACAGAAGACGTTGCCGCACAC
GGCAATGCTCGGAGCAATTTTCTTATTGCTTTGCGATATTTTAGGAAGAGTTCTTATTTATCCATATGAAATCTCCATCA
GTTTAATGGTCGGAGTCATTGGTAGCTTTATTTTCCTCTTCTTGTTGTTTGGGAGGAAAGCATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

99.051

0.532