Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QWY21_RS00500 Genome accession   NZ_CP129236
Coordinates   104253..105629 (+) Length   458 a.a.
NCBI ID   WP_300986707.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99253..110629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS00480 (QWY21_00480) - 99646..100116 (+) 471 WP_300986703.1 CtsR family transcriptional regulator -
  QWY21_RS00485 (QWY21_00485) - 100128..100661 (+) 534 WP_300986704.1 UvrB/UvrC motif-containing protein -
  QWY21_RS00490 (QWY21_00490) - 100651..101742 (+) 1092 WP_300986705.1 protein arginine kinase -
  QWY21_RS00495 (QWY21_00495) clpC 101739..104189 (+) 2451 WP_300986706.1 ATP-dependent protease ATP-binding subunit ClpC -
  QWY21_RS00500 (QWY21_00500) radA 104253..105629 (+) 1377 WP_300986707.1 DNA repair protein RadA Machinery gene
  QWY21_RS00505 (QWY21_00505) - 105733..106830 (+) 1098 WP_300986708.1 PIN/TRAM domain-containing protein -
  QWY21_RS00510 (QWY21_00510) ispD 106844..107539 (+) 696 WP_300986709.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QWY21_RS00515 (QWY21_00515) ispF 107536..108036 (+) 501 WP_300986710.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QWY21_RS00520 (QWY21_00520) gltX 108074..109537 (+) 1464 WP_300986711.1 glutamate--tRNA ligase -
  QWY21_RS00525 (QWY21_00525) cysE 109850..110512 (+) 663 WP_300986712.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49905.27 Da        Isoelectric Point: 6.2540

>NTDB_id=851741 QWY21_RS00500 WP_300986707.1 104253..105629(+) (radA) [Planococcus sp. N022]
MAKKKTKFMCQSCGYESAKWMGKCPGCGDWNTMVEEVEVTAPKGTRGAFQHSATVAQKATPINSIETQQEPRVETEMGEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEEVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDTAPNVYDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPEGIRVVGVESVNDALREIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=851741 QWY21_RS00500 WP_300986707.1 104253..105629(+) (radA) [Planococcus sp. N022]
ATGGCTAAAAAGAAAACAAAGTTCATGTGCCAGTCATGTGGCTATGAATCTGCTAAATGGATGGGAAAATGTCCAGGGTG
CGGTGATTGGAACACGATGGTTGAAGAAGTGGAAGTGACAGCCCCTAAAGGTACACGCGGCGCTTTTCAGCATTCGGCAA
CTGTGGCACAAAAAGCGACACCCATTAATTCAATTGAAACGCAGCAGGAGCCGCGGGTAGAGACTGAAATGGGCGAATTA
AACCGGGTGCTTGGTGGCGGTATTGTTCCAGGATCGCTTGTTTTAATAGGAGGAGATCCGGGAATCGGGAAATCAACGTT
ATTGCTGCAAGTATCTGCAATGCTCGCGAACAGCGGAAGCCGGGTGTTGTATATTTCCGGTGAGGAATCCATCCGGCAAA
CAAAACTGCGGGCGGAGCGGTTAGATGCATCTTCTTCAGAACTGTTCATTTACGCGGAAACAAATTTGGAGTTGATTCAT
CACACGATTGAAGAAGTGGCTCCTGATTTTGTCATTGTCGATTCAATCCAAACGGTTCACCACCCGGAAGTGACGTCTGC
ACCGGGTAGTGTTACACAAGTGCGGGAAAGTACGGCAGAGTTGATGCGTATTGCGAAAACGAAGAATATCGCGATTTTCC
TTGTTGGCCATGTAACCAAAGAAGGGCAAATTGCAGGTCCGCGGATTCTCGAACATATGGTAGATACGGTGCTATATTTT
GAAGGCGAACGCCACCATACGTACCGGATTTTGCGGAGTGTCAAAAACCGTTTTGGTTCCACAAACGAAATTGCCATTTT
TGAAATGCTACAAAGCGGTTTGAAAGAAGTACTGAATCCGTCGGAATTGTTCTTGCAAGAGCGTTCAAGCGGTGCTGCAG
GTTCAACGGTTGTGGCCTCGATGGAAGGCACGCGTCCAATCCTTGTAGAAATTCAAGCTTTAGTAACACCTTCAAGTTTC
AACTATCCAAAACGAATGGCCACAGGCATTGATCAAAACAGAGTATCGTTGTTAATGGCGGTATTGGAAAAACGGGTTGG
CATGCTGCTTCAAGCCCAAGATGCGTATATAAAAGTCGCGGGTGGGGTAAAGCTTGATGAGCCGGCCATCGATTTGGCGG
TGTTGGCAAGCATAGTTTCGAGTTTCCGGGACACTGCACCCAACGTCTACGATTGTATTATCGGAGAAGTCGGGCTCACC
GGTGAAATTCGCCGCGTGTCACGGATTGAACAGCGTGTCCAAGAAGCGGCGAAACTCGGGTTCAAGCGGGCGATTGTACC
GGCTTCCAATTTAGGCGGCTGGGATTACCCTGAAGGAATCCGCGTTGTCGGAGTTGAAAGCGTGAACGATGCGTTAAGAG
AAATATTCCCACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.51

98.908

0.727
  radA Streptococcus pneumoniae Rx1

62.719

99.563

0.624
  radA Streptococcus pneumoniae D39

62.719

99.563

0.624
  radA Streptococcus pneumoniae R6

62.719

99.563

0.624
  radA Streptococcus pneumoniae TIGR4

62.719

99.563

0.624
  radA Streptococcus mitis NCTC 12261

62.719

99.563

0.624
  radA Streptococcus mitis SK321

62.719

99.563

0.624