Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QWY16_RS08625 Genome accession   NZ_CP129235
Coordinates   1728740..1730437 (+) Length   565 a.a.
NCBI ID   WP_300992736.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723740..1735437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS08600 (QWY16_08600) xseB 1724141..1724377 (+) 237 WP_300992730.1 exodeoxyribonuclease VII small subunit -
  QWY16_RS08605 (QWY16_08605) - 1724374..1725252 (+) 879 WP_300992732.1 polyprenyl synthetase family protein -
  QWY16_RS08610 (QWY16_08610) dxs 1725344..1727245 (+) 1902 WP_300992734.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QWY16_RS08615 (QWY16_08615) - 1727245..1728066 (+) 822 WP_300993356.1 TlyA family RNA methyltransferase -
  QWY16_RS08620 (QWY16_08620) argR 1728274..1728723 (+) 450 WP_036809248.1 transcriptional regulator ArgR -
  QWY16_RS08625 (QWY16_08625) recN 1728740..1730437 (+) 1698 WP_300992736.1 DNA repair protein RecN Machinery gene
  QWY16_RS08630 (QWY16_08630) spo0A 1730473..1731231 (+) 759 WP_300992738.1 sporulation transcription factor Spo0A -
  QWY16_RS08635 (QWY16_08635) - 1731367..1731834 (+) 468 WP_300992740.1 plastocyanin/azurin family copper-binding protein -
  QWY16_RS08640 (QWY16_08640) - 1731945..1732679 (+) 735 WP_300992741.1 glycerophosphodiester phosphodiesterase family protein -
  QWY16_RS08645 (QWY16_08645) - 1732713..1732946 (-) 234 WP_300992743.1 DUF2627 domain-containing protein -
  QWY16_RS08650 (QWY16_08650) - 1733072..1735117 (+) 2046 WP_300992745.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63565.24 Da        Isoelectric Point: 4.9091

>NTDB_id=851715 QWY16_RS08625 WP_300992736.1 1728740..1730437(+) (recN) [Planococcus sp. N016]
MLRELDIRNFAIIDALSVSFTEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKRAEIEGLFSLETMQHPVFRK
LEEFGIDASDGDILLRRELNDKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHVYLLDQFAGKSIAKAK
ESYLHTYDKYMKLKREFASYNENEQQIAQRIDLLTFQLREIEAAELVAGEEEELLQERKKLQNFNKIYESVSAAHEAIQG
ESKGLDWLGSAMSEIEHAASVDEEFSSHSEILSGAFYQIQDVSGEIKRIIDDMEFDPARLNEIEQRLALLQSLKRKYGAS
VEDILLYHETQVDELDRLINRDQRLQLDQAKLKELTEDLRVEAEELTLLRKKAAKDLGEAIMEQLQALHMGKASFEVNFS
ALPNGRFDRNGRDAIAFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKNVENQRTITTVHELDGDERTEEMSRMLSGAEITELTLQHAEELLTLARDR
KLTMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=851715 QWY16_RS08625 WP_300992736.1 1728740..1730437(+) (recN) [Planococcus sp. N016]
ATGCTTCGGGAACTGGATATACGCAATTTTGCCATTATTGATGCACTCTCAGTCAGTTTCACAGAAGGATTGACCGTGTT
GACCGGGGAAACGGGTGCCGGGAAATCCATTATCATTGATGCTGTGCATTTATTGGCCGGAGGACGAGGAAGCCAAGAAT
TTATACGCCATGGCGCTAAAAGAGCGGAAATTGAAGGGCTTTTCTCCTTGGAAACTATGCAGCATCCGGTGTTTCGGAAA
CTAGAGGAATTTGGTATTGACGCCAGTGACGGTGATATTTTGCTGCGCCGGGAACTGAACGATAAGGGGAAAAATGTTTG
CCGCATCAACGGGAAACTGGTGACGATTTCGATCTTGCGGGAAGTCGGCGCCGCTTTGATCGATATTCATGGCCAGCATG
AAACACAGGAATTGATGGATGAAAAACAGCATGTGTATTTGCTGGATCAATTTGCTGGAAAATCGATTGCCAAAGCGAAG
GAAAGCTATCTTCATACCTACGATAAGTACATGAAGCTGAAGCGTGAATTTGCCTCATATAATGAAAACGAGCAGCAGAT
TGCCCAGCGGATTGACCTTTTGACGTTTCAGCTGCGGGAAATCGAAGCTGCTGAACTGGTTGCGGGAGAAGAAGAAGAGC
TGCTGCAAGAACGCAAAAAACTTCAGAATTTCAATAAAATCTATGAGTCGGTGTCCGCCGCGCATGAAGCGATTCAAGGA
GAGTCGAAAGGCCTCGACTGGCTGGGTTCTGCAATGTCAGAAATTGAGCATGCAGCTTCGGTGGATGAGGAATTCAGCAG
CCACTCCGAAATACTTTCCGGGGCTTTTTATCAGATTCAGGATGTTTCTGGCGAAATCAAGCGTATAATAGATGATATGG
AATTCGATCCGGCAAGGCTGAACGAAATCGAGCAGCGTCTGGCGCTTCTTCAATCGTTAAAAAGAAAATATGGGGCTTCT
GTAGAAGACATTTTGCTTTATCATGAAACGCAAGTGGATGAGCTCGACCGCTTGATTAATCGTGATCAGCGTTTGCAGCT
TGACCAAGCGAAACTCAAGGAACTTACGGAAGACCTCCGCGTGGAAGCGGAAGAGTTGACGCTGTTGCGAAAGAAAGCCG
CGAAGGATTTAGGCGAAGCCATTATGGAACAGCTGCAGGCGCTGCATATGGGGAAAGCGTCATTCGAAGTGAATTTCAGT
GCATTGCCGAATGGGCGTTTCGACCGGAATGGCCGCGATGCAATTGCTTTTTATATTTCAACCAACCTTGGAGAACCGCT
GAAACCACTGACAAAAGTGGCATCAGGCGGAGAGCTTTCAAGAATGATGCTGGCGTTAAAAACGATTTTTTCAAAACACC
AAGGCATTACTTCCATCATATTCGACGAAGTGGATACGGGCGTCAGCGGCCGGGTGGCACAGGCAATCGCGGAAAAAATC
GCCGCTATTTCCGTCCATTCGCAAGTGCTGTGCATTTCCCATTTGCCGCAAGTTGCGGCTATGGCAGACCAGCATTTATT
CATCGAAAAGAATGTGGAAAATCAGCGCACCATAACGACCGTCCATGAACTGGATGGAGATGAACGTACAGAAGAAATGA
GCAGAATGCTGTCTGGAGCAGAAATTACAGAATTGACATTGCAACATGCCGAAGAATTGCTGACGCTGGCACGCGACAGA
AAACTGACGATGAGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.389

100

0.524