Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QWY16_RS02270 Genome accession   NZ_CP129235
Coordinates   429698..430648 (+) Length   316 a.a.
NCBI ID   WP_300991245.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424698..435648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS02255 (QWY16_02255) hflX 425158..426429 (+) 1272 WP_300991242.1 GTPase HflX -
  QWY16_RS02260 (QWY16_02260) - 426604..428325 (-) 1722 WP_300991243.1 ABC transporter ATP-binding protein -
  QWY16_RS02265 (QWY16_02265) - 428498..429361 (+) 864 WP_300991244.1 DUF6612 family protein -
  QWY16_RS02270 (QWY16_02270) ceuB 429698..430648 (+) 951 WP_300991245.1 ABC transporter permease Machinery gene
  QWY16_RS02275 (QWY16_02275) - 430641..431588 (+) 948 WP_300991246.1 iron chelate uptake ABC transporter family permease subunit -
  QWY16_RS02280 (QWY16_02280) - 431585..432346 (+) 762 WP_300991247.1 ABC transporter ATP-binding protein -
  QWY16_RS02285 (QWY16_02285) - 432367..433320 (+) 954 WP_300991248.1 siderophore ABC transporter substrate-binding protein -
  QWY16_RS02290 (QWY16_02290) - 433403..433711 (+) 309 WP_300991249.1 antibiotic biosynthesis monooxygenase -
  QWY16_RS02295 (QWY16_02295) - 433865..434932 (+) 1068 WP_300991250.1 ABC transporter permease -
  QWY16_RS02300 (QWY16_02300) - 434936..435619 (+) 684 WP_300991251.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34853.03 Da        Isoelectric Point: 9.9588

>NTDB_id=851705 QWY16_RS02270 WP_300991245.1 429698..430648(+) (ceuB) [Planococcus sp. N016]
MKKRYLIPALIILSVISLFVGVSSISITDLLDYQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFVIAYLYANRFTVAGMGEDFSKNLGLKYRSVVNIGLVLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLMCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=851705 QWY16_RS02270 WP_300991245.1 429698..430648(+) (ceuB) [Planococcus sp. N016]
ATGAAAAAAAGATATTTAATACCAGCACTGATCATACTGTCAGTTATTTCGCTGTTTGTCGGAGTAAGCAGTATCAGCAT
CACCGATCTGCTTGACTATCAATCGGAAGAAACACAGATTTTCTTAATCAGCCGTCTGCCAAGGCTGGTTGCGATTCTGC
TGGCAGGTGCTGGAATGAGTATGGCAGGACTCATTATGCAACAGCTGAGCCGCAACAAATTTGTGTCTCCTACGACGGCA
GGTACATTGGATGCTACACGGCTTGGAATTCTCGTATCGATGTTATTGTTTGCCAATGCATCGATGTTGGAAAAAATGAC
GGTAGCGTTCGCTTTTGCACTTGCCGGAACGTTCCTTTTTATGCAAATTCTTGACCGCATCAAATTCAAGGATGCTATAT
TCATTCCTTTAGTCGGTTTGATGTTCGGAAATATCCTATCTTCAATCACTACCTTTTTCGCTTACCGGGCGGATGTTATT
CAAAACATGTCTGCTTGGCTGCAAGGCGACTTTTCAATGGTGATGAAAGGAAGTTATGAACTTCTTTACATCAGCGTTCC
GGTGTTTGTCATCGCGTACCTCTACGCCAACCGATTTACGGTTGCGGGAATGGGTGAGGATTTCTCTAAAAACTTAGGGT
TGAAGTACCGGAGCGTTGTCAACATCGGCTTGGTTCTTGTCGCTTTGATAACAGCGACGGTTGTTTTGACAGTAGGCGTT
ATCCCGTTTTTAGGGTTGATCATTCCGAATATCGTATCGATTTTCAAAGGTGACCATCTGCAAAAAACATTGCCGCACAC
AGCTATGCTTGGAGCAATTTTCTTGCTGATGTGCGATATCTTAGGAAGAGTTTTAATTTATCCGTATGAAATTTCCATCA
GTTTAATGGTCGGTGTCATCGGAAGCTTCATTTTCCTCTTCTTGTTGTTTAGGAGGAGAGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528