Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QWY16_RS00495 Genome accession   NZ_CP129235
Coordinates   102279..103655 (+) Length   458 a.a.
NCBI ID   WP_300990925.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97279..108655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS00475 (QWY16_00475) - 97677..98147 (+) 471 WP_300990920.1 CtsR family transcriptional regulator -
  QWY16_RS00480 (QWY16_00480) - 98159..98692 (+) 534 WP_300990921.1 UvrB/UvrC motif-containing protein -
  QWY16_RS00485 (QWY16_00485) - 98682..99773 (+) 1092 WP_300990923.1 protein arginine kinase -
  QWY16_RS00490 (QWY16_00490) clpC 99770..102217 (+) 2448 WP_300990924.1 ATP-dependent protease ATP-binding subunit ClpC -
  QWY16_RS00495 (QWY16_00495) radA 102279..103655 (+) 1377 WP_300990925.1 DNA repair protein RadA Machinery gene
  QWY16_RS00500 (QWY16_00500) - 103759..104859 (+) 1101 WP_300990926.1 PIN/TRAM domain-containing protein -
  QWY16_RS00505 (QWY16_00505) ispD 104873..105568 (+) 696 WP_300990927.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QWY16_RS00510 (QWY16_00510) ispF 105565..106065 (+) 501 WP_300990928.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QWY16_RS00515 (QWY16_00515) gltX 106106..107569 (+) 1464 WP_300990929.1 glutamate--tRNA ligase -
  QWY16_RS00520 (QWY16_00520) cysE 107913..108575 (+) 663 WP_300990930.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49855.28 Da        Isoelectric Point: 6.5934

>NTDB_id=851703 QWY16_RS00495 WP_300990925.1 102279..103655(+) (radA) [Planococcus sp. N016]
MAKKKTKFICQSCGYESAKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSAAVSQKATPINSIKTEEEPRVETEMGEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAERLNASSSELFIYAETNLELIH
HTIEDVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPEGIRVIGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=851703 QWY16_RS00495 WP_300990925.1 102279..103655(+) (radA) [Planococcus sp. N016]
ATGGCTAAGAAAAAGACGAAGTTTATTTGTCAGTCGTGCGGTTATGAATCTGCAAAATGGATGGGGAAATGCCCAGGATG
CGGAGAATGGAATCAGATGGTAGAAGAAGTGGAAGTAGCGGCGCCTAAAGGGACACGTGGTGCGTTTCAGCATTCCGCTG
CTGTTTCCCAAAAAGCGACGCCGATTAATTCCATTAAAACAGAGGAAGAACCACGCGTAGAGACTGAGATGGGCGAGTTG
AACCGGGTGCTGGGCGGCGGTATTGTACCAGGTTCTCTCGTTTTGATTGGAGGAGACCCGGGAATCGGGAAGTCCACCTT
GCTTCTCCAAGTGTCTGCCATGCTTGCCAATAGCGGCAGCCGCGTATTGTATATCTCCGGAGAAGAGTCTATTCGCCAAA
CTAAATTACGGGCAGAGCGTTTAAATGCTTCTTCTTCAGAATTGTTCATCTATGCAGAGACCAATCTGGAATTGATTCAT
CATACAATTGAAGATGTTGCACCTGATTTTGTTATTGTGGATTCGATTCAAACAGTTCACCATCCAGAAGTGACTTCAGC
TCCGGGAAGCGTGACACAGGTCCGGGAAAGCACAGCGGAATTGATGCGCATTGCAAAAACAAAAAATATCGCGATCTTCT
TGGTAGGGCACGTAACTAAAGAAGGACAAATTGCGGGACCACGTATTCTCGAGCATATGGTGGATACGGTACTGTATTTT
GAAGGGGAACGCCATCATACTTACCGCATTTTGCGAAGTGTGAAAAACCGCTTTGGTTCAACCAACGAAATTGCAATCTT
TGAAATGCTACAAGGCGGGTTGAAGGAAGTGCTGAACCCATCTGAATTGTTTTTGCAGGAACGTTCGAGCGGAGCAGCCG
GATCAACGGTAGTGGCTTCAATGGAAGGGACACGCCCAATTTTGGTGGAAATCCAGGCGCTCGTCACGCCTTCGAGCTTT
AACTATCCAAAACGGATGGCGACAGGAATTGATCAAAACCGCGTATCGCTGTTGATGGCGGTGCTAGAGAAACGAGTCGG
CATGTTGTTACAGGCCCAAGATGCCTATATCAAAGTCGCGGGTGGGGTAAAGCTTGATGAACCGGCAATTGATTTGGCAG
TGCTCGCAAGCATTGTTTCAAGTTACCGGGATAAAGCGCCGAATGTCTATGATTGCATTATCGGTGAAGTTGGGCTGACT
GGTGAAGTTCGCCGTGTATCGAGGATTGAACAACGCGTCCAGGAAGCGGCTAAGTTAGGGTTTAAACGGGCAATAGTGCC
AGCTTCTAATTTAGGAGGCTGGGATTACCCAGAAGGAATACGGGTAATTGGTGTTGAAAGTGTAAATGATGCATTAAAAG
AAATTTTTCCACAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.068

98.908

0.723
  radA Streptococcus pneumoniae Rx1

63.596

99.563

0.633
  radA Streptococcus pneumoniae D39

63.596

99.563

0.633
  radA Streptococcus pneumoniae R6

63.596

99.563

0.633
  radA Streptococcus pneumoniae TIGR4

63.596

99.563

0.633
  radA Streptococcus mitis NCTC 12261

63.596

99.563

0.633
  radA Streptococcus mitis SK321

63.596

99.563

0.633