Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE31_RS15155 Genome accession   NZ_AP027254
Coordinates   3006123..3006638 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JNE120442     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001123..3011638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE31_RS15135 (JNE120442_28720) emrA 3001271..3002443 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE31_RS15140 (JNE120442_28730) emrB 3002460..3003998 (+) 1539 WP_042102192.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE31_RS15145 (JNE120442_28740) - 3004256..3004963 (+) 708 WP_001561911.1 RNA ligase family protein -
  QUE31_RS15150 (JNE120442_28750) - 3004960..3006072 (+) 1113 WP_001561912.1 ATP-binding protein -
  QUE31_RS15155 (JNE120442_28760) luxS 3006123..3006638 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE31_RS15160 (JNE120442_28770) gshA 3006788..3008344 (-) 1557 WP_042105369.1 glutamate--cysteine ligase -
  QUE31_RS15165 (JNE120442_28780) yqaA 3008417..3008845 (-) 429 WP_001287462.1 YqaA family protein -
  QUE31_RS15170 (JNE120442_28790) yqaB 3008842..3009408 (-) 567 WP_000273325.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE31_RS15200 (JNE120442_28800) csrA 3010731..3010916 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85166 QUE31_RS15155 WP_001130211.1 3006123..3006638(-) (luxS) [Escherichia coli strain JNE120442]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85166 QUE31_RS15155 WP_001130211.1 3006123..3006638(-) (luxS) [Escherichia coli strain JNE120442]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment