Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QWV57_RS04030 Genome accession   NZ_CP129217
Coordinates   783694..785517 (+) Length   607 a.a.
NCBI ID   WP_013523174.1    Uniprot ID   -
Organism   Geobacillus zalihae strain JS1-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 778694..790517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWV57_RS04010 (QWV57_04010) - 779023..779682 (-) 660 WP_301100716.1 TerC family protein -
  QWV57_RS04015 (QWV57_04015) mecA 779893..780573 (+) 681 WP_020753707.1 adaptor protein MecA -
  QWV57_RS04020 (QWV57_04020) cls 780670..782178 (+) 1509 WP_011230321.1 cardiolipin synthase -
  QWV57_RS04025 (QWV57_04025) - 782366..783694 (+) 1329 WP_129446824.1 competence protein CoiA family protein -
  QWV57_RS04030 (QWV57_04030) pepF 783694..785517 (+) 1824 WP_013523174.1 oligoendopeptidase F Regulator
  QWV57_RS04035 (QWV57_04035) - 785531..785728 (-) 198 WP_015374161.1 hypothetical protein -
  QWV57_RS04040 (QWV57_04040) spxH 786154..787047 (-) 894 WP_015374162.1 ClpXP adapter protein SpxH -
  QWV57_RS04045 (QWV57_04045) - 787040..787453 (-) 414 WP_015374163.1 globin-like protein -
  QWV57_RS04050 (QWV57_04050) - 787556..788179 (-) 624 WP_015374164.1 lytic transglycosylase domain-containing protein -
  QWV57_RS04055 (QWV57_04055) - 788176..788769 (-) 594 WP_011230328.1 CYTH domain-containing protein -
  QWV57_RS04060 (QWV57_04060) - 788905..789282 (+) 378 WP_060788649.1 hypothetical protein -
  QWV57_RS04065 (QWV57_04065) - 789411..790049 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70330.41 Da        Isoelectric Point: 4.9959

>NTDB_id=851605 QWV57_RS04030 WP_013523174.1 783694..785517(+) (pepF) [Geobacillus zalihae strain JS1-2]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=851605 QWV57_RS04030 WP_013523174.1 783694..785517(+) (pepF) [Geobacillus zalihae strain JS1-2]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACTTAATTGCTACGATTCATGAACATTTGCCATTGCTGCACCGGT
ATGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGACTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTAAAAGAGGGGCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGTGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAATTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATTTTCGTAGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTATTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAGGCATTGACGGCCGAGACGTTGACGTCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTACGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTTAGCAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTAAAAGCCGGCAGTTCTGATTACCCGATTGAAGTATTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

97.694

0.501