Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QYE79_RS22655 Genome accession   NZ_CP129200
Coordinates   4832362..4832886 (-) Length   174 a.a.
NCBI ID   WP_096069704.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4827362..4837886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS22640 (QYE79_22640) - 4827446..4830922 (-) 3477 WP_096069703.1 PilC/PilY family type IV pilus protein -
  QYE79_RS22645 (QYE79_22645) - 4830936..4831541 (-) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  QYE79_RS22650 (QYE79_22650) - 4831538..4832353 (-) 816 WP_016254061.1 PilW family protein -
  QYE79_RS22655 (QYE79_22655) pilV 4832362..4832886 (-) 525 WP_096069704.1 type IV pilus modification protein PilV Machinery gene
  QYE79_RS22660 (QYE79_22660) - 4832896..4833384 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  QYE79_RS22665 (QYE79_22665) - 4833507..4834007 (-) 501 WP_023435614.1 GspH/FimT family pseudopilin -
  QYE79_RS22670 (QYE79_22670) thiO 4834147..4835241 (+) 1095 WP_033991130.1 glycine oxidase ThiO -
  QYE79_RS22675 (QYE79_22675) pilR 4835287..4836624 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18793.53 Da        Isoelectric Point: 4.9113

>NTDB_id=851481 QYE79_RS22655 WP_096069704.1 4832362..4832886(-) (pilV) [Pseudomonas aeruginosa strain PA942]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPATPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=851481 QYE79_RS22655 WP_096069704.1 4832362..4832886(-) (pilV) [Pseudomonas aeruginosa strain PA942]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAACCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

58.857

100

0.592