Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   V6S45_RS21075 Genome accession   NZ_CP145630
Coordinates   4384364..4385032 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain S1-SRL-01-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4379364..4390032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S45_RS21045 (V6S45_21045) rfaQ 4379542..4380600 (-) 1059 WP_000360394.1 lipopolysaccharide core heptosyltransferase RfaQ -
  V6S45_RS21050 (V6S45_21050) waaA 4381013..4382290 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  V6S45_RS21055 (V6S45_21055) coaD 4382298..4382777 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  V6S45_RS21060 (V6S45_21060) mutM 4382816..4383625 (-) 810 WP_001114528.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  V6S45_RS21065 (V6S45_21065) rpmG 4383723..4383890 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  V6S45_RS21070 (V6S45_21070) rpmB 4383911..4384147 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  V6S45_RS21075 (V6S45_21075) radC 4384364..4385032 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  V6S45_RS21080 (V6S45_21080) coaBC 4385204..4386424 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  V6S45_RS21085 (V6S45_21085) dut 4386402..4386860 (+) 459 WP_000976070.1 dUTP diphosphatase -
  V6S45_RS21090 (V6S45_21090) slmA 4386967..4387563 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  V6S45_RS21095 (V6S45_21095) pyrE 4387600..4388241 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  V6S45_RS21100 (V6S45_21100) rph 4388306..4389022 (-) 717 WP_001247093.1 ribonuclease PH -
  V6S45_RS21105 (V6S45_21105) yicC 4389149..4390012 (+) 864 WP_000621326.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=851296 V6S45_RS21075 WP_001297375.1 4384364..4385032(-) (radC) [Escherichia coli strain S1-SRL-01-C]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=851296 V6S45_RS21075 WP_001297375.1 4384364..4385032(-) (radC) [Escherichia coli strain S1-SRL-01-C]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496