Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6S45_RS19460 Genome accession   NZ_CP145630
Coordinates   4027400..4028077 (+) Length   225 a.a.
NCBI ID   WP_001241107.1    Uniprot ID   -
Organism   Escherichia coli strain S1-SRL-01-C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4022400..4033077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S45_RS19425 (V6S45_19425) gspG 4022880..4023317 (+) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -
  V6S45_RS19430 (V6S45_19430) gspH 4023325..4023834 (+) 510 WP_001076042.1 type II secretion system minor pseudopilin GspH -
  V6S45_RS19435 (V6S45_19435) gspI 4023831..4024208 (+) 378 WP_001041753.1 type II secretion system minor pseudopilin GspI -
  V6S45_RS19440 (V6S45_19440) gspJ 4024201..4024788 (+) 588 WP_000610627.1 type II secretion system minor pseudopilin GspJ -
  V6S45_RS19445 (V6S45_19445) gspK 4024781..4025764 (+) 984 WP_001058526.1 type II secretion system minor pseudopilin GspK -
  V6S45_RS19450 (V6S45_19450) gspL 4025779..4026942 (+) 1164 WP_001115232.1 type II secretion system protein GspL -
  V6S45_RS19455 (V6S45_19455) gspM 4026939..4027400 (+) 462 WP_001389811.1 type II secretion system protein GspM -
  V6S45_RS19460 (V6S45_19460) pilD 4027400..4028077 (+) 678 WP_001241107.1 prepilin peptidase GspO Machinery gene
  V6S45_RS19465 (V6S45_19465) bfr 4028106..4028582 (-) 477 WP_000675504.1 bacterioferritin -
  V6S45_RS19470 (V6S45_19470) bfd 4028654..4028848 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  V6S45_RS19475 (V6S45_19475) chiA 4029017..4031719 (-) 2703 WP_000773171.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24914.85 Da        Isoelectric Point: 7.9563

>NTDB_id=851290 V6S45_RS19460 WP_001241107.1 4027400..4028077(+) (pilD) [Escherichia coli strain S1-SRL-01-C]
MAMLLPLFILVGFIAGYFVNAMAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACVLAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=851290 V6S45_RS19460 WP_001241107.1 4027400..4028077(+) (pilD) [Escherichia coli strain S1-SRL-01-C]
ATGGCAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATGGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGTCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTGCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.463

100

0.382