Detailed information NTG0851271

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: QWU49_RS07205
• Genome accession: NZ_CP129143
• Coordinates: 1882358..1883725 (-)
• Length: 455 a.a.
• NCBI ID: WP_008665988.1
• Uniprot ID: A0AB37MX46
• Organism: Bacteroides uniformis strain JCM5828
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1877358..1888725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QWU49_RS07200 (QWU49_07175)	-	1880730..1882352 (-)	1623	WP_005828513.1	NAD(P)/FAD-dependent oxidoreductase	-
QWU49_RS07205 (QWU49_07180)	radA	1882358..1883725 (-)	1368	WP_008665988.1	DNA repair protein RadA	Machinery gene
QWU49_RS07210 (QWU49_07185)	-	1883847..1884389 (+)	543	WP_005828510.1	beta-class carbonic anhydrase	-
QWU49_RS07215 (QWU49_07190)	-	1884400..1885437 (-)	1038	WP_005828507.1	asparaginase	-
QWU49_RS07220 (QWU49_07195)	thrA	1885886..1888318 (+)	2433	WP_005828504.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50054.89 Da
• Isoelectric Point: 6.8896

>NTDB_id=851271 QWU49_RS07205 WP_008665988.1 1882358..1883725(-) (radA) [Bacteroides uniformis strain JCM5828]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGMWNTYVEEVVRKEVVNKRPVSGIETAKAKPVTLHEIVADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHI
KNIRPDIVIIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGIAIASAIEGIRPFPIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTQKIKIELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=851271 QWU49_RS07205 WP_008665988.1 1882358..1883725(-) (radA) [Bacteroides uniformis strain JCM5828]
ATGGCTAAAGAGAAGACGGTTTATGTATGCAGCAACTGCGGACAAGACTCTCCCAAATGGGTAGGCAAGTGTCCGTCGTG
CGGAATGTGGAACACGTATGTGGAAGAGGTGGTACGGAAAGAAGTGGTGAACAAACGTCCCGTATCGGGTATAGAGACCG
CCAAAGCCAAACCCGTAACCCTCCATGAAATTGTAGCCGATGACGAACCGCGCATCGATCTCCATGATGCCGAACTGAAC
CGGGTACTGGGTGGCGGTCTGGTACAAGGTTCTCTTGTATTAATTGGCGGCGAACCGGGTATCGGGAAATCCACCCTGGT
GCTACAAACCGTACTCCGTATACCGGAGAAACGTATCCTCTACGTCTCCGGCGAAGAAAGTACCCGTCAGTTGAAACTGC
GTGCCGACCGTTTGACAAGTGCTTCCAGTGATTGCCTCATCGTGTGCGAAACTTCCCTGGAACAGATTTACGTCCATATC
AAGAACATCCGCCCGGACATCGTCATCATCGACTCCATACAGACGATTTCTACCGAAACCCTTGAATCGTCGCCGGGGAG
TATTGCCCAGGTACGGGAATGTTCCGCCTCCATCCTGCGCTTTGCCAAGGAAACGCATACGGCGGTCATCCTTATCGGGC
ATATCAATAAGGAAGGAAGCATAGCCGGCCCCAAGGTACTGGAACATATCGTGGATACCGTACTCCAGTTCGAGGGCGAC
CAGCACTACATGTACCGCATCCTGCGCAGCATCAAGAACCGCTTCGGAAGCACTGCCGAACTGGGTATTTACGAAATGCG
GCAAGATGGATTACGGCAGGTGAGCAACCCATCCGAACTGCTGCTGAGCCAAGACCATGAAGGTATGAGCGGCATAGCCA
TCGCCTCCGCGATAGAAGGCATCAGACCGTTCCCCATCGAGACGCAGGCATTGGTCAGCAGTGCCGTATATGGTAACCCA
CAACGCTCTGCCACAGGGTTCGACATCCGCCGCATGAATATGCTGCTGGCCGTATTGGAAAAACGTGTAGGCTTCAAACT
GGCACAGAAAGATGTATTTCTCAATATTGCCGGCGGATTGAAAGTGAACGACCCGGCAATAGACCTTGCCGTCATCAGCG
CCATCCTCTCCAGCAACATGGACACGGCCATAGAGCCAGAGGTGTGCATGGCAGGAGAAATAGGTCTGTCGGGAGAGATA
CGCCCGGTAAACCGCATTGAGCAGCGCATCGGAGAAGCAGAGAAACTTGGCTTCAAGCGTTTTATACTTCCCAAGTATAA
TATGCAGGGACTCAATACCCAAAAGATAAAAATAGAATTAATACCGGTACGGAAGGTAGAAGAGGCATTCCGTGCCTTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• AAA domain (AAA_25) (72-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.327	100	0.508
radA	Streptococcus mitis SK321	48.132	100	0.481
radA	Streptococcus mitis NCTC 12261	48.132	100	0.481
radA	Streptococcus pneumoniae Rx1	48.132	100	0.481
radA	Streptococcus pneumoniae D39	48.132	100	0.481
radA	Streptococcus pneumoniae R6	48.132	100	0.481
radA	Streptococcus pneumoniae TIGR4	48.132	100	0.481