Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUF33_RS22125 Genome accession   NZ_AP027246
Coordinates   4447562..4448077 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JNE120393     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4442562..4453077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF33_RS22080 (JNE120393_42160) csrA 4443014..4443199 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QUF33_RS22110 (JNE120393_42170) yqaB 4444792..4445358 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUF33_RS22115 (JNE120393_42180) yqaA 4445355..4445783 (+) 429 WP_001287457.1 YqaA family protein -
  QUF33_RS22120 (JNE120393_42190) gshA 4445856..4447412 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QUF33_RS22125 (JNE120393_42200) luxS 4447562..4448077 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUF33_RS22130 (JNE120393_42210) emrB 4448141..4449679 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUF33_RS22135 (JNE120393_42220) emrA 4449696..4450868 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUF33_RS22140 (JNE120393_42230) emrR 4450995..4451525 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUF33_RS22145 (JNE120393_42240) ygaH 4451616..4451951 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUF33_RS22150 (JNE120393_42250) ygaZ 4451941..4452678 (-) 738 WP_000445660.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85124 QUF33_RS22125 WP_001130211.1 4447562..4448077(+) (luxS) [Escherichia coli strain JNE120393]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85124 QUF33_RS22125 WP_001130211.1 4447562..4448077(+) (luxS) [Escherichia coli strain JNE120393]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment