Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QWI19_RS14200 Genome accession   NZ_CP129123
Coordinates   2709311..2710057 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704311..2715057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS14170 - 2704639..2705073 (+) 435 WP_069839654.1 helix-turn-helix domain-containing protein -
  QWI19_RS14175 - 2705087..2705533 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  QWI19_RS14180 - 2705564..2707000 (+) 1437 WP_169057996.1 recombinase family protein -
  QWI19_RS14185 radC 2707013..2707420 (-) 408 Protein_2747 DNA repair protein RadC -
  QWI19_RS14190 maf 2707457..2708026 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QWI19_RS14195 spoIIB 2708179..2709177 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  QWI19_RS14200 comC 2709311..2710057 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  QWI19_RS14205 folC 2710197..2711489 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QWI19_RS14210 valS 2711549..2714191 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  QWI19_RS14215 - 2714639..2714830 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=851223 QWI19_RS14200 WP_072592551.1 2709311..2710057(-) (comC) [Bacillus subtilis strain 6D1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=851223 QWI19_RS14200 WP_072592551.1 2709311..2710057(-) (comC) [Bacillus subtilis strain 6D1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996