Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QWI19_RS12555 Genome accession   NZ_CP129123
Coordinates   2436269..2437036 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain 6D1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2431269..2442036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS12535 ppsR 2431444..2432256 (-) 813 WP_015251688.1 pyruvate, water dikinase regulatory protein -
  QWI19_RS12540 ccpN 2432282..2432920 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QWI19_RS12545 glyS 2433053..2435092 (-) 2040 WP_015251687.1 glycine--tRNA ligase subunit beta -
  QWI19_RS12550 glyQ 2435085..2435972 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QWI19_RS12555 recO 2436269..2437036 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  QWI19_RS12560 yqzL 2437073..2437216 (-) 144 WP_003230053.1 YqzL family protein -
  QWI19_RS12565 era 2437364..2438269 (-) 906 WP_015251686.1 GTPase Era -
  QWI19_RS12570 - 2438250..2438660 (-) 411 WP_032722130.1 cytidine deaminase -
  QWI19_RS12575 unpK 2438779..2439150 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  QWI19_RS12580 ybeY 2439131..2439604 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  QWI19_RS12585 pgpH 2439605..2441740 (-) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=851215 QWI19_RS12555 WP_014477369.1 2436269..2437036(-) (recO) [Bacillus subtilis strain 6D1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=851215 QWI19_RS12555 WP_014477369.1 2436269..2437036(-) (recO) [Bacillus subtilis strain 6D1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996