Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QWI19_RS12275 Genome accession   NZ_CP129123
Coordinates   2386330..2387400 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain 6D1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2381330..2392400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS12230 tapA 2381809..2382570 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  QWI19_RS12235 yqzG 2382842..2383168 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QWI19_RS12240 spoIITA 2383210..2383389 (-) 180 WP_029726723.1 YqzE family protein -
  QWI19_RS12245 comGG 2383460..2383834 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  QWI19_RS12250 comGF 2383835..2384218 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  QWI19_RS12255 comGE 2384244..2384591 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QWI19_RS12260 comGD 2384575..2385006 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QWI19_RS12265 comGC 2384996..2385292 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QWI19_RS12270 comGB 2385306..2386343 (-) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  QWI19_RS12275 comGA 2386330..2387400 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QWI19_RS12280 - 2387613..2387810 (-) 198 WP_014480259.1 CBS domain-containing protein -
  QWI19_RS12285 corA 2387812..2388765 (-) 954 WP_004399136.1 magnesium transporter CorA -
  QWI19_RS12290 yqhB 2388908..2390236 (+) 1329 WP_029726716.1 hemolysin family protein -
  QWI19_RS12295 rsbRD 2390289..2391125 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  QWI19_RS12305 mgsR 2391349..2391729 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  QWI19_RS12310 yqgY 2391961..2392206 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=851214 QWI19_RS12275 WP_004399124.1 2386330..2387400(-) (comGA) [Bacillus subtilis strain 6D1]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=851214 QWI19_RS12275 WP_004399124.1 2386330..2387400(-) (comGA) [Bacillus subtilis strain 6D1]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1