Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QWI19_RS12215 Genome accession   NZ_CP129123
Coordinates   2379976..2380311 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 6D1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374976..2385311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS12195 gcvT 2375568..2376656 (-) 1089 WP_015251720.1 glycine cleavage system aminomethyltransferase GcvT -
  QWI19_RS12200 hepAA 2377098..2378771 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  QWI19_RS12205 yqhG 2378792..2379586 (+) 795 WP_003230200.1 YqhG family protein -
  QWI19_RS12210 sinI 2379769..2379942 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QWI19_RS12215 sinR 2379976..2380311 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QWI19_RS12220 tasA 2380404..2381189 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  QWI19_RS12225 sipW 2381253..2381825 (-) 573 WP_003246088.1 signal peptidase I SipW -
  QWI19_RS12230 tapA 2381809..2382570 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  QWI19_RS12235 yqzG 2382842..2383168 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QWI19_RS12240 spoIITA 2383210..2383389 (-) 180 WP_029726723.1 YqzE family protein -
  QWI19_RS12245 comGG 2383460..2383834 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  QWI19_RS12250 comGF 2383835..2384218 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  QWI19_RS12255 comGE 2384244..2384591 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QWI19_RS12260 comGD 2384575..2385006 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QWI19_RS12265 comGC 2384996..2385292 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=851207 QWI19_RS12215 WP_003226345.1 2379976..2380311(+) (sinR) [Bacillus subtilis strain 6D1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=851207 QWI19_RS12215 WP_003226345.1 2379976..2380311(+) (sinR) [Bacillus subtilis strain 6D1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1