Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QWI19_RS12020 Genome accession   NZ_CP129123
Coordinates   2345345..2346148 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2340345..2351148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS11995 glpQB 2341484..2342215 (-) 732 WP_015251738.1 glycerophosphodiester phosphodiesterase -
  QWI19_RS12000 yqiI 2342294..2342914 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  QWI19_RS12005 - 2342934..2343230 (-) 297 WP_014480225.1 hypothetical protein -
  QWI19_RS12010 - 2343538..2343690 (+) 153 WP_014480226.1 hypothetical protein -
  QWI19_RS12015 yqiG 2343763..2344881 (+) 1119 WP_015251737.1 NADH-dependent flavin oxidoreductase -
  QWI19_RS12020 spo0A 2345345..2346148 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QWI19_RS12025 spoIVB 2346424..2347704 (-) 1281 WP_015251736.1 SpoIVB peptidase -
  QWI19_RS12030 recN 2347879..2349609 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  QWI19_RS12035 argR 2349646..2350095 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QWI19_RS12040 yqxC 2350193..2351038 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=851204 QWI19_RS12020 WP_003226427.1 2345345..2346148(-) (spo0A) [Bacillus subtilis strain 6D1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=851204 QWI19_RS12020 WP_003226427.1 2345345..2346148(-) (spo0A) [Bacillus subtilis strain 6D1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1