Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QWI19_RS11030 Genome accession   NZ_CP129123
Coordinates   2168310..2168930 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163310..2173930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS10990 ptsA 2164441..2164947 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  QWI19_RS10995 ypqA 2165085..2165504 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  QWI19_RS11000 sppG 2165525..2165902 (-) 378 WP_015251832.1 YppG family protein -
  QWI19_RS11005 yppF 2166090..2166278 (+) 189 WP_003230690.1 YppF family protein -
  QWI19_RS11010 yppE 2166317..2166688 (-) 372 WP_003246080.1 YppE family protein -
  QWI19_RS11015 yppD 2166734..2166979 (-) 246 WP_015251831.1 YppD family protein -
  QWI19_RS11020 sspM 2167178..2167282 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QWI19_RS11025 yppC 2167307..2168269 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  QWI19_RS11030 recU 2168310..2168930 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QWI19_RS11035 ponA 2168952..2171696 (+) 2745 WP_015251829.1 transglycosylase domain-containing protein -
  QWI19_RS11040 ypoC 2171772..2172266 (-) 495 WP_009967579.1 YpoC family protein -
  QWI19_RS11045 nth 2172263..2172922 (-) 660 WP_009967580.1 endonuclease III -
  QWI19_RS11050 dnaD 2172941..2173639 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=851203 QWI19_RS11030 WP_004399067.1 2168310..2168930(+) (recU) [Bacillus subtilis strain 6D1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=851203 QWI19_RS11030 WP_004399067.1 2168310..2168930(+) (recU) [Bacillus subtilis strain 6D1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1