Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QWI19_RS07815 Genome accession   NZ_CP129123
Coordinates   1491934..1492212 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain 6D1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486934..1497212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS07795 panEB 1488122..1489033 (+) 912 WP_015252174.1 ketopantoate reductase family protein -
  QWI19_RS07800 ampS 1489067..1490299 (-) 1233 WP_003232341.1 aminopeptidase -
  QWI19_RS07805 ykpC 1490408..1490542 (-) 135 WP_003238865.1 protein YkpC -
  QWI19_RS07810 mreBH 1490643..1491650 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QWI19_RS07815 abrB 1491934..1492212 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QWI19_RS07820 kinC 1492402..1493688 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  QWI19_RS07825 ykqA 1493704..1494537 (+) 834 WP_015252173.1 gamma-glutamylcyclotransferase -
  QWI19_RS07830 ktrC 1494600..1495265 (+) 666 WP_015252172.1 Ktr system potassium transporter KtrC -
  QWI19_RS07835 ade 1495421..1497154 (+) 1734 WP_015252171.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=851198 QWI19_RS07815 WP_003244728.1 1491934..1492212(+) (abrB) [Bacillus subtilis strain 6D1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=851198 QWI19_RS07815 WP_003244728.1 1491934..1492212(+) (abrB) [Bacillus subtilis strain 6D1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576