Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QWI19_RS05615 Genome accession   NZ_CP129123
Coordinates   1085100..1085678 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain 6D1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080100..1090678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS21630 - 1080611..1081126 (-) 516 WP_372553879.1 methyl-accepting chemotaxis protein -
  QWI19_RS21635 - 1081367..1081993 (-) 627 Protein_1038 protoglobin domain-containing protein -
  QWI19_RS05600 comW 1082048..1083577 (-) 1530 WP_316273501.1 FAD-dependent oxidoreductase -
  QWI19_RS05605 yhxC 1083689..1084546 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  QWI19_RS05610 yhzC 1084574..1084807 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QWI19_RS05615 comK 1085100..1085678 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QWI19_RS05620 yhxD 1085723..1086622 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  QWI19_RS05625 yhjA 1086840..1087109 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  QWI19_RS05630 yhjB 1087153..1088622 (-) 1470 WP_015252422.1 sodium:solute symporter -
  QWI19_RS05635 yhjC 1088619..1088819 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  QWI19_RS05640 - 1089018..1089389 (-) 372 WP_014476361.1 hypothetical protein -
  QWI19_RS05645 yhjE 1089541..1090164 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  QWI19_RS05650 lepB 1090166..1090672 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=851184 QWI19_RS05615 WP_003245329.1 1085100..1085678(+) (comK) [Bacillus subtilis strain 6D1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=851184 QWI19_RS05615 WP_003245329.1 1085100..1085678(+) (comK) [Bacillus subtilis strain 6D1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1