Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QWD88_RS12330 Genome accession   NZ_CP129120
Coordinates   2557281..2557877 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126718     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2552281..2562877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWD88_RS12305 (QWD88_12305) mobB 2552654..2553175 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  QWD88_RS12310 (QWD88_12310) glp 2553136..2554428 (-) 1293 WP_032874748.1 gephyrin-like molybdotransferase Glp -
  QWD88_RS12315 (QWD88_12315) - 2554446..2555465 (-) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  QWD88_RS12320 (QWD88_12320) - 2555517..2556119 (-) 603 WP_032874745.1 molybdenum cofactor guanylyltransferase -
  QWD88_RS12325 (QWD88_12325) - 2556265..2557257 (+) 993 WP_032874743.1 hypothetical protein -
  QWD88_RS12330 (QWD88_12330) rok 2557281..2557877 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  QWD88_RS12335 (QWD88_12335) - 2558330..2558788 (-) 459 WP_032874741.1 TlpA disulfide reductase family protein -
  QWD88_RS12340 (QWD88_12340) - 2559077..2559883 (+) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  QWD88_RS12345 (QWD88_12345) - 2559918..2560163 (-) 246 WP_003154596.1 YkuS family protein -
  QWD88_RS12350 (QWD88_12350) - 2560224..2561348 (-) 1125 WP_032874737.1 N-acetyldiaminopimelate deacetylase -
  QWD88_RS12355 (QWD88_12355) dapD 2561419..2562129 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QWD88_RS12360 (QWD88_12360) - 2562211..2562666 (-) 456 WP_032874735.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=851117 QWD88_RS12330 WP_003154591.1 2557281..2557877(-) (rok) [Bacillus velezensis strain SRCM126718]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=851117 QWD88_RS12330 WP_003154591.1 2557281..2557877(-) (rok) [Bacillus velezensis strain SRCM126718]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843