Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QWD88_RS12220 Genome accession   NZ_CP129120
Coordinates   2537091..2537375 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126718     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532091..2542375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWD88_RS12200 (QWD88_12200) ade 2532197..2533930 (-) 1734 WP_032874763.1 adenine deaminase -
  QWD88_RS12205 (QWD88_12205) ktrC 2534079..2534744 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QWD88_RS12210 (QWD88_12210) - 2534785..2535612 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  QWD88_RS12215 (QWD88_12215) - 2535614..2536918 (-) 1305 WP_032874761.1 ATP-binding protein -
  QWD88_RS12220 (QWD88_12220) abrB 2537091..2537375 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QWD88_RS12225 (QWD88_12225) mreBH 2537647..2538654 (+) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  QWD88_RS12230 (QWD88_12230) - 2538726..2538860 (+) 135 WP_003154559.1 protein YkpC -
  QWD88_RS12235 (QWD88_12235) - 2538961..2540193 (+) 1233 WP_007409644.1 aminopeptidase -
  QWD88_RS12240 (QWD88_12240) - 2540223..2541131 (-) 909 WP_032874760.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=851116 QWD88_RS12220 WP_003154557.1 2537091..2537375(-) (abrB) [Bacillus velezensis strain SRCM126718]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=851116 QWD88_RS12220 WP_003154557.1 2537091..2537375(-) (abrB) [Bacillus velezensis strain SRCM126718]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543