Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QWT68_RS13880 Genome accession   NZ_CP129119
Coordinates   2753412..2754362 (+) Length   316 a.a.
NCBI ID   WP_040285570.1    Uniprot ID   -
Organism   Sporosarcina trichiuri strain 0.2-SM1T-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748412..2759362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWT68_RS13865 (QWT68_13865) hflX 2748974..2750257 (+) 1284 WP_290148690.1 GTPase HflX -
  QWT68_RS13870 (QWT68_13870) - 2750356..2752074 (-) 1719 WP_040285568.1 ABC transporter ATP-binding protein -
  QWT68_RS13875 (QWT68_13875) - 2752290..2753159 (+) 870 WP_040285569.1 DUF6612 family protein -
  QWT68_RS13880 (QWT68_13880) ceuB 2753412..2754362 (+) 951 WP_040285570.1 ABC transporter permease Machinery gene
  QWT68_RS13885 (QWT68_13885) - 2754355..2755305 (+) 951 WP_040285571.1 iron chelate uptake ABC transporter family permease subunit -
  QWT68_RS13890 (QWT68_13890) - 2755302..2756063 (+) 762 WP_040285572.1 ABC transporter ATP-binding protein -
  QWT68_RS13895 (QWT68_13895) - 2756092..2757069 (+) 978 WP_040285682.1 siderophore ABC transporter substrate-binding protein -
  QWT68_RS13900 (QWT68_13900) - 2757181..2759124 (+) 1944 WP_290148691.1 FapA family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34859.11 Da        Isoelectric Point: 10.1610

>NTDB_id=851071 QWT68_RS13880 WP_040285570.1 2753412..2754362(+) (ceuB) [Sporosarcina trichiuri strain 0.2-SM1T-5]
MKKRYLFTALIALSLLSLFVGVSHISPKDLLDFKSEETEIFLISRLPRLLAIILAGAGMSITGLIMQQLSRNKFVSPTTA
GTLDAAKLGILVSMLLFTNASTIEKMLVAFAFALGGTLLFMKILDQVKFKDAIFIPLVGLMFGNILSSITTFFAYKANVI
QNMASWLQGDFSLIMKGRYELLYISIPVLIITYFYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITTTVVLTVGV
IPFLGLIIPNIVSIIKGDNLERTLPHTAMLGAIFLLICDILGRVIIFPYEISISLMVGVIGSAIFLYMLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=851071 QWT68_RS13880 WP_040285570.1 2753412..2754362(+) (ceuB) [Sporosarcina trichiuri strain 0.2-SM1T-5]
ATGAAGAAACGTTATTTATTCACAGCGCTGATAGCCCTGTCGCTGCTTTCGCTATTTGTCGGCGTCAGCCATATTTCACC
GAAAGACCTGCTGGACTTCAAATCAGAAGAAACTGAGATCTTCCTGATCAGCCGTCTGCCCCGGCTGCTCGCTATCATAC
TTGCAGGGGCCGGCATGAGTATCACCGGGCTGATCATGCAGCAGCTGAGCCGCAACAAATTTGTTTCGCCGACTACGGCG
GGAACGCTCGATGCTGCCAAACTTGGAATCCTCGTATCCATGCTTCTTTTCACGAACGCATCGACCATCGAAAAGATGCT
GGTCGCTTTCGCATTTGCGCTCGGCGGCACGCTGCTGTTCATGAAAATACTGGATCAGGTCAAATTCAAAGATGCAATTT
TCATCCCTCTTGTCGGCCTGATGTTCGGGAACATCCTATCATCGATCACGACATTCTTCGCCTATAAAGCGAATGTGATC
CAGAACATGGCTTCCTGGCTGCAAGGAGACTTTTCACTGATCATGAAAGGCCGGTATGAATTGCTGTACATAAGTATCCC
CGTCCTCATCATCACCTATTTCTATGCGAACCGGTTCACTGTTGCCGGGATGGGTGAAGACTTTTCGAAAAACCTGGGGC
TTGCTTATCGGAGGATCGTCAATATTGGACTGATATTGGTCGCTCTCATTACAACCACTGTTGTCTTGACGGTAGGGGTC
ATTCCGTTTCTCGGCCTGATCATCCCGAATATTGTATCGATCATCAAAGGGGACAATCTGGAAAGGACACTTCCGCACAC
GGCCATGCTCGGTGCCATCTTCCTGCTGATCTGTGACATTCTTGGCCGGGTCATCATTTTCCCGTACGAAATCTCGATCA
GTCTGATGGTCGGTGTCATCGGCAGCGCCATCTTCCTCTATATGCTGTTTAGGAGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

99.051

0.519