Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QWT69_RS14995 Genome accession   NZ_CP129118
Coordinates   3050511..3051461 (-) Length   316 a.a.
NCBI ID   WP_317966982.1    Uniprot ID   -
Organism   Sporosarcina oncorhynchi strain T2O-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3045511..3056461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWT69_RS14975 (QWT69_14975) - 3045706..3047652 (-) 1947 WP_317966974.1 FapA family protein -
  QWT69_RS14980 (QWT69_14980) - 3047786..3048760 (-) 975 WP_317966976.1 siderophore ABC transporter substrate-binding protein -
  QWT69_RS14985 (QWT69_14985) - 3048810..3049571 (-) 762 WP_317966978.1 ATP-binding cassette domain-containing protein -
  QWT69_RS14990 (QWT69_14990) - 3049568..3050518 (-) 951 WP_317966980.1 iron chelate uptake ABC transporter family permease subunit -
  QWT69_RS14995 (QWT69_14995) ceuB 3050511..3051461 (-) 951 WP_317966982.1 ABC transporter permease Machinery gene
  QWT69_RS15000 (QWT69_15000) - 3051817..3052701 (-) 885 WP_317966984.1 DUF6612 family protein -
  QWT69_RS15005 (QWT69_15005) - 3052919..3054637 (+) 1719 WP_317966986.1 ABC transporter ATP-binding protein -
  QWT69_RS15010 (QWT69_15010) hflX 3054734..3056005 (-) 1272 WP_317966988.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34884.23 Da        Isoelectric Point: 10.3172

>NTDB_id=851030 QWT69_RS14995 WP_317966982.1 3050511..3051461(-) (ceuB) [Sporosarcina oncorhynchi strain T2O-4]
MKKRYLFIALILLSLLSLFVGVSSIKPMDLLDFKSDHTEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASTIEKMVVAFIFALGGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYKRIVNIGLILVALVTTTVILTVGM
IPFLGLIIPNIVSIFHGDNLKKTLPHTALLGANFLLVCDILGRVLIFPYEISISLMVGVIGSGVFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=851030 QWT69_RS14995 WP_317966982.1 3050511..3051461(-) (ceuB) [Sporosarcina oncorhynchi strain T2O-4]
ATGAAGAAACGTTATTTGTTTATTGCCTTAATCTTATTATCTTTGCTATCACTTTTTGTAGGAGTTAGTTCCATTAAACC
GATGGATCTATTGGATTTTAAATCGGATCATACCGAAATATTCCTAATCAGCCGGGTGCCAAGACTTGTGGCCATTCTTC
TCGCAGGCGCGGGAATGAGTATCGCGGGATTGATTATGCAACAGCTGAGCAGGAACAAGTTTGTTTCACCGACGACTGCA
GGTACGCTTGACGCTACGCGACTAGGCATACTCGTATCGATGTTGTTGTTCACCAACGCCTCGACTATCGAGAAAATGGT
TGTCGCATTTATATTTGCGCTTGGCGGTACATTGCTATTCATGCAAATTTTGGACCGCATCAAGTTTAAGGATGCTATAT
TCATCCCTCTTGTTGGTCTGATGTTCGGTAACATCCTTTCTTCAATCACGACGTTCTTCGCTTATAAATCGAACGTCATC
CAGAATATGTCTGCTTGGTTACAAGGGGACTTCTCGATGATTATGAAAGGGCGCTATGAGCTTTTATACATAAGCATTCC
GGTGCTTATCATTACCTATCTGTATGCGAATCGTTTCACTGTTGCAGGTATGGGGGAAGATTTCTCGAAAAACTTAGGAC
TAGCATACAAGCGCATCGTCAATATTGGTTTAATATTGGTGGCACTTGTAACGACGACTGTCATTTTGACTGTCGGAATG
ATTCCGTTTCTCGGATTGATCATTCCGAATATCGTCTCCATCTTTCACGGGGATAACTTAAAGAAAACATTGCCGCACAC
CGCTTTGCTAGGTGCAAACTTCCTGCTAGTTTGCGACATTCTCGGCAGGGTGCTCATCTTTCCATATGAAATCTCCATCA
GCCTAATGGTCGGGGTCATCGGAAGCGGCGTATTCCTCTACTTGCTGTTTAGGAGGAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.397

97.152

0.528