Detailed information NTG0850877

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QU610_RS07555
• Genome accession: NZ_CP129105
• Coordinates: 1563384..1564583 (-)
• Length: 399 a.a.
• NCBI ID: WP_137296699.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP45k
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1558384..1569583

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU610_RS07530 (QU610_07530)	-	1558395..1558913 (-)	519	WP_000760576.1	hypothetical protein	-
QU610_RS07535 (QU610_07535)	-	1558910..1559854 (-)	945	WP_000362459.1	CpaF/VirB11 family protein	-
QU610_RS07540 (QU610_07540)	-	1559859..1560131 (-)	273	WP_170961833.1	hypothetical protein	-
QU610_RS07545 (QU610_07545)	-	1560149..1561138 (-)	990	WP_137296697.1	hypothetical protein	-
QU610_RS07550 (QU610_07550)	-	1561151..1563400 (-)	2250	WP_137296698.1	collagen-like protein	-
QU610_RS07555 (QU610_07555)	comB10	1563384..1564583 (-)	1200	WP_137296699.1	DNA type IV secretion system protein ComB10	Machinery gene
QU610_RS07560 (QU610_07560)	-	1564580..1566235 (-)	1656	WP_137296700.1	TrbG/VirB9 family P-type conjugative transfer protein	-
QU610_RS07565 (QU610_07565)	-	1566232..1567398 (-)	1167	WP_137296701.1	VirB8/TrbF family protein	-
QU610_RS07570 (QU610_07570)	-	1567391..1567531 (-)	141	WP_120899888.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44646.32 Da
• Isoelectric Point: 9.9727

>NTDB_id=850877 QU610_RS07555 WP_137296699.1 1563384..1564583(-) (comB10) [Helicobacter pylori strain HP45k]
MKQSLIKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKPLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFIAPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=850877 QU610_RS07555 WP_137296699.1 1563384..1564583(-) (comB10) [Helicobacter pylori strain HP45k]
ATGAAACAATCCTTAATTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAACCATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCACAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTGCCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.163	98.496	0.514