Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QU610_RS00445 Genome accession   NZ_CP129105
Coordinates   91468..92781 (+) Length   437 a.a.
NCBI ID   WP_170961822.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86468..97781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS00425 (QU610_00425) crdR 86794..87435 (+) 642 WP_001169751.1 copper response regulator transcription factor CrdR -
  QU610_RS00430 (QU610_00430) crdS 87401..88603 (+) 1203 WP_137296533.1 copper-sensing histidine kinase CrdS -
  QU610_RS00435 (QU610_00435) - 88606..90000 (+) 1395 WP_137296532.1 NAD(P)H-hydrate dehydratase -
  QU610_RS00440 (QU610_00440) - 90011..91471 (+) 1461 WP_078249153.1 replicative DNA helicase -
  QU610_RS00445 (QU610_00445) comEC/comE3 91468..92781 (+) 1314 WP_170961822.1 ComEC/Rec2 family competence protein Machinery gene
  QU610_RS00450 (QU610_00450) mqnP 92849..93691 (+) 843 WP_249351068.1 menaquinone biosynthesis prenyltransferase MqnP -
  QU610_RS00455 (QU610_00455) - 93684..94178 (+) 495 WP_170961821.1 hypothetical protein -
  QU610_RS00460 (QU610_00460) - 94191..94697 (+) 507 WP_000953110.1 hypothetical protein -
  QU610_RS00465 (QU610_00465) - 94691..95494 (+) 804 WP_137296529.1 phosphatidylserine decarboxylase -
  QU610_RS00470 (QU610_00470) nadA 95484..96494 (+) 1011 WP_137296528.1 quinolinate synthase NadA -
  QU610_RS00475 (QU610_00475) nadC 96494..97315 (+) 822 WP_137296527.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50364.36 Da        Isoelectric Point: 9.7987

>NTDB_id=850867 QU610_RS00445 WP_170961822.1 91468..92781(+) (comEC/comE3) [Helicobacter pylori strain HP45k]
MKDKTFQGAFELLTTPKEYLLCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHWRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQQRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLMRFFQAIALS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLAIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=850867 QU610_RS00445 WP_170961822.1 91468..92781(+) (comEC/comE3) [Helicobacter pylori strain HP45k]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACACAATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCCCATTCCAACGCTTTGGTGGGTAATTTGTATCGCGCACTTTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAACAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTCTAATGGGCTTATTAGGGTTTTTGGCATGCTTCTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAATGCGATTTTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGCTAGATCCCA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959