Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QVH38_RS19365 Genome accession   NZ_CP129027
Coordinates   4058445..4059878 (+) Length   477 a.a.
NCBI ID   WP_047060252.1    Uniprot ID   -
Organism   Enterobacter asburiae strain RG1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4053445..4064878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH38_RS19335 (QVH38_19335) - 4054012..4054989 (+) 978 WP_094934467.1 calcium/sodium antiporter -
  QVH38_RS19340 (QVH38_19340) kdsD 4055003..4055989 (+) 987 WP_196355043.1 arabinose-5-phosphate isomerase KdsD -
  QVH38_RS19345 (QVH38_19345) kdsC 4056004..4056570 (+) 567 WP_196355064.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QVH38_RS19350 (QVH38_19350) lptC 4056567..4057142 (+) 576 WP_033146749.1 LPS export ABC transporter periplasmic protein LptC -
  QVH38_RS19355 (QVH38_19355) lptA 4057111..4057665 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QVH38_RS19360 (QVH38_19360) lptB 4057672..4058397 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  QVH38_RS19365 (QVH38_19365) rpoN/rpoN1 4058445..4059878 (+) 1434 WP_047060252.1 RNA polymerase factor sigma-54 Machinery gene
  QVH38_RS19370 (QVH38_19370) hpf 4059901..4060188 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  QVH38_RS19375 (QVH38_19375) ptsN 4060271..4060762 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QVH38_RS19380 (QVH38_19380) rapZ 4060808..4061662 (+) 855 WP_014885397.1 RNase adapter RapZ -
  QVH38_RS19385 (QVH38_19385) npr 4061659..4061931 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  QVH38_RS19390 (QVH38_19390) mtgA 4061971..4062696 (-) 726 WP_064673371.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QVH38_RS19395 (QVH38_19395) elbB 4062693..4063346 (-) 654 WP_167818742.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=850740 QVH38_RS19365 WP_047060252.1 4058445..4059878(+) (rpoN/rpoN1) [Enterobacter asburiae strain RG1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=850740 QVH38_RS19365 WP_047060252.1 4058445..4059878(+) (rpoN/rpoN1) [Enterobacter asburiae strain RG1]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTGAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAAAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482