Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   JUD77_RS01895 Genome accession   NZ_AP024414
Coordinates   387402..387698 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain TA8730     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 382402..392698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUD77_RS01885 (TA8730_03610) - 383802..386780 (+) 2979 WP_203620531.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  JUD77_RS01890 (TA8730_03620) - 387050..387409 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JUD77_RS01895 (TA8730_03630) HI0659 387402..387698 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  JUD77_RS01900 (TA8730_03640) - 387859..389775 (+) 1917 WP_114877247.1 ABC transporter ATP-binding protein -
  JUD77_RS01905 (TA8730_03650) - 389785..390321 (+) 537 WP_103708099.1 type I DNA topoisomerase -
  JUD77_RS01910 (TA8730_03660) - 390337..390888 (+) 552 WP_103708098.1 Sua5/YciO/YrdC/YwlC family protein -
  JUD77_RS01915 (TA8730_03670) aroE 390892..391698 (+) 807 WP_103708097.1 shikimate dehydrogenase -
  JUD77_RS01920 (TA8730_03680) - 391912..392475 (+) 564 WP_103708096.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=85073 JUD77_RS01895 WP_005650837.1 387402..387698(+) (HI0659) [Haemophilus influenzae strain TA8730]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=85073 JUD77_RS01895 WP_005650837.1 387402..387698(+) (HI0659) [Haemophilus influenzae strain TA8730]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTTCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment