Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LBA42_RS01485 Genome accession   NZ_CP145437
Coordinates   283324..284394 (-) Length   356 a.a.
NCBI ID   WP_000817877.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 278324..289394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS01470 (LBA42_01470) - 279408..280451 (+) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -
  LBA42_RS01475 (LBA42_01475) lpdA 280497..282200 (+) 1704 WP_001162916.1 dihydrolipoyl dehydrogenase -
  LBA42_RS01480 (LBA42_01480) - 282264..283253 (+) 990 WP_000873987.1 lipoate--protein ligase -
  LBA42_RS01485 (LBA42_01485) xerS 283324..284394 (-) 1071 WP_000817877.1 tyrosine recombinase XerS Machinery gene
  LBA42_RS01490 (LBA42_01490) - 284969..286519 (-) 1551 WP_000392548.1 ClC family H(+)/Cl(-) exchange transporter -
  LBA42_RS01495 (LBA42_01495) - 286535..287314 (-) 780 WP_000201123.1 ribonuclease HII -
  LBA42_RS01500 (LBA42_01500) ylqF 287301..288152 (-) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  LBA42_RS01505 (LBA42_01505) - 288234..288426 (+) 193 Protein_298 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.16 Da        Isoelectric Point: 9.6220

>NTDB_id=850700 LBA42_RS01485 WP_000817877.1 283324..284394(-) (xerS) [Streptococcus pneumoniae strain HAC 39-1996]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSALENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=850700 LBA42_RS01485 WP_000817877.1 283324..284394(-) (xerS) [Streptococcus pneumoniae strain HAC 39-1996]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGCTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997