Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QVH39_RS20655 Genome accession   NZ_CP129025
Coordinates   4287555..4288988 (+) Length   477 a.a.
NCBI ID   WP_032650397.1    Uniprot ID   W7NTZ0
Organism   Enterobacter pseudoroggenkampii strain SC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4282555..4293988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH39_RS20625 (QVH39_20625) - 4283123..4284100 (+) 978 WP_023309354.1 calcium/sodium antiporter -
  QVH39_RS20630 (QVH39_20630) kdsD 4284113..4285099 (+) 987 WP_008501450.1 arabinose-5-phosphate isomerase KdsD -
  QVH39_RS20635 (QVH39_20635) kdsC 4285114..4285680 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QVH39_RS20640 (QVH39_20640) lptC 4285677..4286252 (+) 576 WP_024906353.1 LPS export ABC transporter periplasmic protein LptC -
  QVH39_RS20645 (QVH39_20645) lptA 4286221..4286775 (+) 555 WP_024906352.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QVH39_RS20650 (QVH39_20650) lptB 4286782..4287507 (+) 726 WP_025756692.1 LPS export ABC transporter ATP-binding protein -
  QVH39_RS20655 (QVH39_20655) rpoN/rpoN1 4287555..4288988 (+) 1434 WP_032650397.1 RNA polymerase factor sigma-54 Machinery gene
  QVH39_RS20660 (QVH39_20660) hpf 4289011..4289298 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  QVH39_RS20665 (QVH39_20665) ptsN 4289381..4289872 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QVH39_RS20670 (QVH39_20670) rapZ 4289918..4290772 (+) 855 WP_014885397.1 RNase adapter RapZ -
  QVH39_RS20675 (QVH39_20675) npr 4290769..4291041 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  QVH39_RS20680 (QVH39_20680) mtgA 4291081..4291806 (-) 726 WP_061716412.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QVH39_RS20685 (QVH39_20685) elbB 4291803..4292456 (-) 654 WP_061716459.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54139.91 Da        Isoelectric Point: 4.3332

>NTDB_id=850694 QVH39_RS20655 WP_032650397.1 4287555..4288988(+) (rpoN/rpoN1) [Enterobacter pseudoroggenkampii strain SC1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=850694 QVH39_RS20655 WP_032650397.1 4287555..4288988(+) (rpoN/rpoN1) [Enterobacter pseudoroggenkampii strain SC1]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTACCAGGGCGAAACCACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACTCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACTGGCTATTTGACCGTCACGCTGGACGAT
ATTCTGGAAAGCATGGGCGACGACGAGATAGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCGTGGCTCG
ACGAGGCGCGCCTAATCATCAGCGATCATCTGGATCTGCTGGCGAACCACGATTTCCGCTCCCTGATGCGCGTCACGCGC
CTGAAGGAAGAAGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGATGTGCTGGTCAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGTCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATTTGCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAAATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAAGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7NTZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48