Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVH39_RS07710 Genome accession   NZ_CP129025
Coordinates   1639331..1639957 (+) Length   208 a.a.
NCBI ID   WP_023311030.1    Uniprot ID   A0A1Z3N2L7
Organism   Enterobacter pseudoroggenkampii strain SC1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634331..1644957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVH39_RS07690 (QVH39_07690) - 1634731..1636491 (-) 1761 WP_061715627.1 Lon protease family protein -
  QVH39_RS07695 (QVH39_07695) matP 1636678..1637130 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  QVH39_RS07700 (QVH39_07700) ompA 1637194..1638249 (-) 1056 WP_024907765.1 porin OmpA -
  QVH39_RS07705 (QVH39_07705) sulA 1638604..1639113 (-) 510 WP_024907764.1 SOS-induced cell division inhibitor SulA -
  QVH39_RS07710 (QVH39_07710) sxy/tfoX 1639331..1639957 (+) 627 WP_023311030.1 TfoX/Sxy family DNA transformation protein Regulator
  QVH39_RS07715 (QVH39_07715) yccS 1639914..1642076 (-) 2163 WP_061715626.1 YccS family putative transporter -
  QVH39_RS07720 (QVH39_07720) - 1642097..1642543 (-) 447 WP_032649128.1 YccF domain-containing protein -
  QVH39_RS07725 (QVH39_07725) helD 1642667..1644721 (+) 2055 WP_061715625.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23906.46 Da        Isoelectric Point: 9.4588

>NTDB_id=850682 QVH39_RS07710 WP_023311030.1 1639331..1639957(+) (sxy/tfoX) [Enterobacter pseudoroggenkampii strain SC1]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=850682 QVH39_RS07710 WP_023311030.1 1639331..1639957(+) (sxy/tfoX) [Enterobacter pseudoroggenkampii strain SC1]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGCTACACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCTGATGGCGAGCTTTATCTTCGGGCTTGTG
AGGAGAGTGCGAAATACTGTGTAAAGAATGCCTCCTCATTTTTGACATTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTTT
TTGAAGCCGGTATTACCAATGAAGAAACACTCCGGGCGCTGGGCGCCAGAGCCAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTCAGTATTAAAGTCCTCTTCGCGCTCGAAGGGGCTATTGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N2L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567