Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LC071_RS20635 Genome accession   NZ_CP129020
Coordinates   3993795..3993971 (+) Length   58 a.a.
NCBI ID   WP_194221184.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain KcN21-2     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3988795..3998971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC071_RS20600 (LC071_20600) - 3989063..3989251 (+) 189 WP_194221177.1 YjzC family protein -
  LC071_RS20605 (LC071_20605) - 3989311..3989490 (-) 180 WP_194221178.1 YjzD family protein -
  LC071_RS20610 (LC071_20610) - 3989566..3990027 (-) 462 WP_226612595.1 TspO/MBR family protein -
  LC071_RS20615 (LC071_20615) - 3990240..3990962 (+) 723 WP_226612597.1 hypothetical protein -
  LC071_RS20620 (LC071_20620) - 3990964..3992154 (-) 1191 WP_226612599.1 FAD-binding oxidoreductase -
  LC071_RS20625 (LC071_20625) - 3992262..3993179 (+) 918 WP_226612600.1 NAD(P)-dependent oxidoreductase -
  LC071_RS20630 (LC071_20630) - 3993196..3993750 (+) 555 WP_194221183.1 DinB family protein -
  LC071_RS20635 (LC071_20635) comZ 3993795..3993971 (+) 177 WP_194221184.1 ComZ family protein Regulator
  LC071_RS20640 (LC071_20640) - 3993984..3994127 (+) 144 WP_159782169.1 hypothetical protein -
  LC071_RS20645 (LC071_20645) - 3994159..3994497 (-) 339 WP_226612601.1 YppG family protein -
  LC071_RS20650 (LC071_20650) - 3994676..3995614 (+) 939 WP_194221186.1 beta-ketoacyl-ACP synthase III -
  LC071_RS20655 (LC071_20655) fabF 3995646..3996884 (+) 1239 WP_306109231.1 beta-ketoacyl-ACP synthase II -
  LC071_RS20660 (LC071_20660) - 3996987..3997520 (-) 534 WP_306109232.1 hypothetical protein -
  LC071_RS20665 (LC071_20665) - 3998220..3998966 (+) 747 WP_194221188.1 YjbA family protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6822.91 Da        Isoelectric Point: 4.0706

>NTDB_id=850651 LC071_RS20635 WP_194221184.1 3993795..3993971(+) (comZ) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
MDQNMKFMQIAMKYLPEAKQSLGEQEIELDLEKMQPLLQLFLKAMEDAYELGKQDAQE

Nucleotide


Download         Length: 177 bp        

>NTDB_id=850651 LC071_RS20635 WP_194221184.1 3993795..3993971(+) (comZ) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
ATGGATCAAAACATGAAGTTTATGCAAATTGCAATGAAGTATTTACCTGAAGCGAAGCAGTCGCTTGGAGAACAAGAAAT
AGAATTAGATCTTGAAAAGATGCAGCCATTGCTTCAGCTCTTTCTTAAGGCTATGGAAGATGCTTATGAGCTCGGGAAGC
AGGATGCACAGGAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(2-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

53.571

96.552

0.517