Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   VP418_RS12675 Genome accession   NZ_CP145430
Coordinates   2638328..2638843 (+) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A20AB02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633328..2643843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP418_RS12655 (VP418_12655) - 2633647..2635107 (+) 1461 WP_000004971.1 amino acid permease -
  VP418_RS12660 (VP418_12660) - 2635384..2636589 (+) 1206 WP_000512707.1 RtcB family protein -
  VP418_RS12665 (VP418_12665) - 2636608..2636751 (+) 144 WP_162138624.1 hypothetical protein -
  VP418_RS12670 (VP418_12670) omp38 2636876..2637946 (-) 1071 WP_000777882.1 outer membrane protein Omp38 -
  VP418_RS12675 (VP418_12675) fimT 2638328..2638843 (+) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  VP418_RS12680 (VP418_12680) - 2638952..2640127 (+) 1176 WP_000129968.1 thiolase family protein -
  VP418_RS12685 (VP418_12685) - 2640254..2640697 (+) 444 WP_001176580.1 VOC family protein -
  VP418_RS12690 (VP418_12690) - 2640740..2641093 (-) 354 WP_000457787.1 SMR family transporter -
  VP418_RS12695 (VP418_12695) - 2641176..2641661 (-) 486 WP_000935249.1 DUF934 domain-containing protein -
  VP418_RS12700 (VP418_12700) - 2641654..2643297 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=850648 VP418_RS12675 WP_000477147.1 2638328..2638843(+) (fimT) [Acinetobacter baumannii strain A20AB02]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=850648 VP418_RS12675 WP_000477147.1 2638328..2638843(+) (fimT) [Acinetobacter baumannii strain A20AB02]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421