Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VP418_RS12525 Genome accession   NZ_CP145430
Coordinates   2608066..2608428 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain A20AB02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2603066..2613428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP418_RS12515 (VP418_12515) - 2605344..2607422 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  VP418_RS12520 (VP418_12520) - 2607469..2608005 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  VP418_RS12525 (VP418_12525) pilH 2608066..2608428 (-) 363 WP_000101096.1 response regulator Machinery gene
  VP418_RS12530 (VP418_12530) pilG 2608452..2608835 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  VP418_RS12535 (VP418_12535) - 2609118..2609756 (+) 639 WP_001989943.1 hypothetical protein -
  VP418_RS12540 (VP418_12540) - 2609816..2610934 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=850646 VP418_RS12525 WP_000101096.1 2608066..2608428(-) (pilH) [Acinetobacter baumannii strain A20AB02]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=850646 VP418_RS12525 WP_000101096.1 2608066..2608428(-) (pilH) [Acinetobacter baumannii strain A20AB02]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392