Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LC071_RS17155 Genome accession   NZ_CP129020
Coordinates   3349261..3350211 (+) Length   316 a.a.
NCBI ID   WP_226616724.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain KcN21-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3344261..3355211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC071_RS17135 (LC071_17135) - 3344683..3345912 (+) 1230 WP_226616728.1 MFS transporter -
  LC071_RS17140 (LC071_17140) - 3345950..3346462 (-) 513 WP_306109137.1 DUF3189 family protein -
  LC071_RS17145 (LC071_17145) - 3346592..3348049 (-) 1458 WP_306109138.1 MDR family MFS transporter -
  LC071_RS17150 (LC071_17150) - 3348557..3349072 (+) 516 WP_226616725.1 GrpB family protein -
  LC071_RS17155 (LC071_17155) ceuB 3349261..3350211 (+) 951 WP_226616724.1 ABC transporter permease Machinery gene
  LC071_RS17160 (LC071_17160) - 3350204..3351151 (+) 948 WP_226616723.1 iron chelate uptake ABC transporter family permease subunit -
  LC071_RS17165 (LC071_17165) - 3351148..3351906 (+) 759 WP_226616722.1 ABC transporter ATP-binding protein -
  LC071_RS17170 (LC071_17170) - 3352048..3353008 (+) 961 Protein_3339 siderophore ABC transporter substrate-binding protein -
  LC071_RS17175 (LC071_17175) - 3353049..3354557 (-) 1509 WP_226616720.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34954.38 Da        Isoelectric Point: 9.9540

>NTDB_id=850645 LC071_RS17155 WP_226616724.1 3349261..3350211(+) (ceuB) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
MKKRYLISLFILLSLISLFIGVKSMSPLEVFNFTDEQSQVFWISRVPRLVSIIIAGASMSICGLIMQQLSRNKFISPTTA
GTMDAVRLGILVSLILFSSASLMQKMVISFLFALAGTFLFMKVLDRVKYKDAIFIPLVGLMFGNVLGSITTFFAYKYDLM
QSIGSWLQGDFSVVLKGQYELLYISVPGLIIAYIYANRFTIAGMGEDFSVNLGLKYKQIVNIGLVIVALVTTVVMLTVGA
IPFLGLIIPNIVSIMMGDNLKANLFPTAMMGAVFVLICDILGRVIIYPYEISIGLMVGVIGSVLFIYLLLRRRAYV

Nucleotide


Download         Length: 951 bp        

>NTDB_id=850645 LC071_RS17155 WP_226616724.1 3349261..3350211(+) (ceuB) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
ATGAAGAAAAGATACTTAATCAGTTTATTTATTTTATTATCCTTAATATCCCTGTTTATCGGGGTGAAAAGCATGTCACC
ACTCGAGGTGTTTAATTTTACGGATGAGCAGAGTCAGGTGTTCTGGATTAGTCGGGTTCCGCGTCTCGTTAGTATTATTA
TTGCCGGAGCAAGTATGAGTATTTGTGGACTTATTATGCAGCAGCTTAGTCGAAATAAGTTTATCTCTCCAACAACGGCA
GGGACGATGGATGCTGTTAGACTTGGGATTCTCGTTTCCCTTATCTTATTTTCCTCAGCTAGCTTAATGCAAAAAATGGT
GATTTCGTTTTTGTTCGCTTTAGCGGGTACGTTCCTTTTTATGAAGGTGCTCGATCGAGTGAAATATAAGGATGCGATCT
TCATTCCACTAGTAGGATTGATGTTTGGGAATGTCCTCGGGTCAATTACTACGTTTTTCGCATATAAATATGATTTAATG
CAGAGCATCGGCTCATGGCTACAGGGAGATTTCTCAGTCGTATTAAAAGGACAGTATGAACTATTATACATAAGCGTTCC
AGGCCTTATCATCGCATACATATATGCCAATCGATTTACGATTGCTGGGATGGGAGAAGACTTCTCAGTGAATCTTGGTT
TAAAGTACAAGCAAATCGTCAACATTGGCCTCGTTATAGTCGCTTTAGTGACGACGGTTGTGATGTTAACAGTGGGAGCC
ATTCCATTTCTCGGTTTGATTATTCCTAATATCGTCTCGATTATGATGGGCGATAATTTAAAAGCGAATCTGTTTCCGAC
TGCCATGATGGGCGCTGTATTTGTGTTAATCTGCGACATTCTTGGTAGAGTGATTATTTATCCTTATGAAATATCGATTG
GGCTTATGGTTGGCGTCATTGGTAGTGTTTTATTTATTTACTTGTTGTTAAGGAGAAGAGCTTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.962

98.734

0.503