Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LC071_RS05080 Genome accession   NZ_CP129020
Coordinates   990499..991254 (-) Length   251 a.a.
NCBI ID   WP_226614550.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain KcN21-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985499..996254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC071_RS05050 (LC071_05050) - 986083..987120 (-) 1038 WP_194219395.1 rod shape-determining protein -
  LC071_RS05055 (LC071_05055) radC 987223..987894 (-) 672 WP_194219641.1 DNA repair protein RadC -
  LC071_RS05060 (LC071_05060) - 987947..988525 (-) 579 WP_226614545.1 nucleoside triphosphate pyrophosphatase -
  LC071_RS05065 (LC071_05065) - 988775..989770 (-) 996 WP_226614546.1 SPOR domain-containing protein -
  LC071_RS05070 (LC071_05070) - 989940..990113 (-) 174 WP_226614548.1 hypothetical protein -
  LC071_RS05075 (LC071_05075) - 990107..990328 (-) 222 WP_226614549.1 hypothetical protein -
  LC071_RS05080 (LC071_05080) comC 990499..991254 (-) 756 WP_226614550.1 A24 family peptidase Machinery gene
  LC071_RS05085 (LC071_05085) - 991617..993326 (-) 1710 WP_226614551.1 sensor domain-containing diguanylate cyclase -
  LC071_RS05090 (LC071_05090) - 993439..994734 (-) 1296 WP_226614553.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 27684.40 Da        Isoelectric Point: 9.2634

>NTDB_id=850623 LC071_RS05080 WP_226614550.1 990499..991254(-) (comC) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
MGVILHSYLFLVGLALGSFYNVVGLRMPVKRSIVAPRSSCPTCERELSPLELVPVFSYLFQRGKCKGCASRISPIYAVVE
FTTALLFTIAPFLVGWSKELVISYGLISLLVIIFVSDITYMLIPDRILLFFAAYFIVGRILVPMDPWYSPFIGAAGGFLL
LLLIAVISKGGMGGGDIKLFAVLGFVFGYQELLLVFFFSTLCGTIIGVTALLTGRVKRKQHIPFGPSIVLGAIITYFYGE
QILHWYISILL

Nucleotide


Download         Length: 756 bp        

>NTDB_id=850623 LC071_RS05080 WP_226614550.1 990499..991254(-) (comC) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
ATGGGGGTCATTTTACATAGTTATTTATTTCTAGTTGGGCTTGCACTTGGGTCTTTTTATAATGTTGTAGGTCTTCGGAT
GCCTGTAAAACGATCGATTGTTGCCCCTCGCTCATCCTGTCCAACGTGTGAACGAGAGCTTTCACCACTTGAGCTTGTGC
CGGTTTTCTCCTATTTATTCCAGCGCGGGAAATGCAAAGGCTGCGCGTCACGTATTTCACCGATATACGCCGTTGTTGAA
TTCACTACGGCACTTCTTTTTACGATTGCACCGTTTCTGGTGGGATGGTCAAAAGAATTGGTCATTTCGTATGGATTGAT
TTCGCTTCTTGTGATTATTTTTGTTTCAGATATCACCTATATGCTTATTCCAGATCGTATTCTTCTCTTTTTTGCTGCTT
ACTTTATTGTTGGTCGAATCCTTGTTCCAATGGATCCGTGGTATAGCCCTTTTATTGGAGCGGCTGGAGGATTTTTATTA
CTCCTTCTCATTGCTGTTATTAGTAAAGGAGGAATGGGCGGCGGTGACATTAAATTATTTGCGGTACTAGGCTTCGTATT
TGGTTATCAGGAATTACTTCTTGTGTTTTTCTTTTCTACTTTGTGTGGCACGATCATTGGGGTAACAGCGCTATTGACTG
GGAGAGTAAAGCGAAAGCAACACATTCCGTTTGGTCCATCGATAGTGCTGGGGGCAATCATAACGTATTTTTATGGTGAA
CAAATCTTACACTGGTATATTAGTATTCTTTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-90)

Type IV leader peptidase family (Peptidase_A24)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.837

97.61

0.506