Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LC048_RS15200 Genome accession   NZ_CP129019
Coordinates   2915782..2916654 (-) Length   290 a.a.
NCBI ID   WP_371931909.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910782..2921654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS15175 (LC048_15175) - 2911198..2912181 (-) 984 WP_226600194.1 ABC transporter ATP-binding protein -
  LC048_RS15180 (LC048_15180) fabF 2912698..2913939 (-) 1242 WP_306050519.1 beta-ketoacyl-ACP synthase II -
  LC048_RS15185 (LC048_15185) - 2914000..2914932 (-) 933 WP_226600193.1 beta-ketoacyl-ACP synthase III -
  LC048_RS15190 (LC048_15190) - 2915273..2915530 (+) 258 WP_306047998.1 hypothetical protein -
  LC048_RS15195 (LC048_15195) comZ 2915569..2915757 (-) 189 WP_226600191.1 ComZ family protein Regulator
  LC048_RS15200 (LC048_15200) med 2915782..2916654 (-) 873 WP_371931909.1 BMP family ABC transporter substrate-binding protein Regulator
  LC048_RS15205 (LC048_15205) - 2916878..2917705 (-) 828 WP_306047999.1 hypothetical protein -
  LC048_RS15210 (LC048_15210) - 2917774..2918511 (-) 738 WP_306048000.1 alpha/beta hydrolase -
  LC048_RS15215 (LC048_15215) - 2918773..2918961 (+) 189 WP_226600187.1 YjzD family protein -
  LC048_RS25100 - 2919119..2919802 (-) 684 WP_371931910.1 AAA family ATPase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32328.19 Da        Isoelectric Point: 4.6457

>NTDB_id=850603 LC048_RS15200 WP_371931909.1 2915782..2916654(-) (med) [Mesobacillus subterraneus strain KcN21-5]
MEKVGLLVPETINDQVWGTKGYRGLLQIQSSLGVDVFFKEGMSSQEDVEAAVKEFDRQGVNLIYGHGNEYAAYFNKISRN
YPDIHFISFNGDARTKNSTSLNFKGYAMGFFGGMVASHMSKTGKVGIIAAYEWQPEVEGFYDGAIFENKDMKVDIRFVGH
WDNQKKALDVLEAVLDEGADVIYPAGDGYNVPVIERVKDRGLHIIGFISDQSDFGESTVLTSTVQHVDDLYELTAEKFNT
GELKSGNLSFDFQDGVISLGEFSPKVDSKFRERIGTFINAYKETGKLPNQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=850603 LC048_RS15200 WP_371931909.1 2915782..2916654(-) (med) [Mesobacillus subterraneus strain KcN21-5]
GTGGAGAAAGTCGGCCTGTTGGTGCCTGAAACTATTAATGATCAGGTGTGGGGGACGAAAGGATATCGAGGACTTCTGCA
AATCCAATCCAGCCTGGGAGTTGATGTCTTTTTCAAAGAAGGTATGAGTTCACAGGAAGATGTAGAGGCTGCAGTGAAAG
AGTTCGACCGGCAGGGAGTTAACCTCATTTATGGGCATGGAAATGAGTACGCAGCTTATTTCAATAAGATATCAAGGAAC
TATCCTGACATACATTTTATTAGCTTTAATGGAGATGCCAGAACAAAAAACTCGACAAGCCTAAATTTTAAAGGATATGC
CATGGGCTTTTTTGGCGGGATGGTGGCGAGCCACATGTCGAAAACCGGCAAGGTTGGAATCATCGCTGCATATGAATGGC
AGCCTGAAGTGGAGGGCTTTTATGATGGTGCGATTTTTGAAAACAAGGATATGAAGGTCGACATTCGTTTTGTTGGACAC
TGGGATAACCAAAAGAAAGCACTCGATGTTCTTGAAGCTGTATTGGATGAGGGTGCCGATGTCATTTATCCTGCTGGAGA
TGGGTATAATGTACCCGTGATTGAAAGGGTGAAGGACAGAGGCTTACATATTATTGGCTTTATTTCGGATCAGTCAGATT
TTGGTGAGTCGACGGTATTGACGAGTACTGTCCAGCACGTTGATGACTTGTATGAATTGACGGCTGAGAAATTCAATACT
GGTGAATTAAAGTCGGGTAACCTATCATTCGACTTTCAGGATGGAGTTATCTCCCTCGGCGAATTCAGTCCAAAAGTCGA
TTCCAAGTTTAGGGAAAGAATAGGCACTTTTATAAATGCTTATAAAGAAACAGGGAAATTACCCAACCAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(2-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.514

99.31

0.541