Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LC048_RS00485 Genome accession   NZ_CP129019
Coordinates   111476..112891 (+) Length   471 a.a.
NCBI ID   WP_226601795.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 106476..117891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS00460 (LC048_00460) - 106667..107302 (-) 636 WP_226601559.1 YigZ family protein -
  LC048_RS00465 (LC048_00465) - 107711..108861 (+) 1151 Protein_94 sensor histidine kinase -
  LC048_RS00470 (LC048_00470) - 108920..109603 (+) 684 WP_226601561.1 response regulator transcription factor -
  LC048_RS00475 (LC048_00475) sda 109768..109929 (+) 162 WP_226601794.1 sporulation histidine kinase inhibitor Sda -
  LC048_RS00480 (LC048_00480) - 110308..111147 (+) 840 WP_226601562.1 DegV family protein -
  LC048_RS00485 (LC048_00485) comFA 111476..112891 (+) 1416 WP_226601795.1 DEAD/DEAH box helicase Machinery gene
  LC048_RS00490 (LC048_00490) - 112888..113595 (+) 708 WP_226601563.1 ComF family protein -
  LC048_RS00495 (LC048_00495) - 113624..114025 (+) 402 WP_226601564.1 TIGR03826 family flagellar region protein -
  LC048_RS00500 (LC048_00500) flgM 114104..114373 (+) 270 WP_226601565.1 flagellar biosynthesis anti-sigma factor FlgM -
  LC048_RS00505 (LC048_00505) - 114568..115038 (+) 471 WP_226601566.1 flagellar protein FlgN -
  LC048_RS00510 (LC048_00510) flgK 115056..116603 (+) 1548 WP_226601567.1 flagellar hook-associated protein FlgK -
  LC048_RS00515 (LC048_00515) flgL 116614..117504 (+) 891 WP_306049154.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53152.63 Da        Isoelectric Point: 9.3790

>NTDB_id=850577 LC048_RS00485 WP_226601795.1 111476..112891(+) (comFA) [Mesobacillus subterraneus strain KcN21-5]
MEVPQSPLLSTDRFFQYNPQLQETLTGKQLLLEELPVSKEEIQKHHDHGYVIYRNGINRERLSCTRCGTTDPSWFAEFPC
VRCGKVELYCRKCLMMGRVSECTLLVSWAGPMLDFEKISEPLRWGGQLSAGQKAASRRVAEAVGNSAELLVWAVAGAGKT
EVLFAGIAQALSTGKRVCVATPRTDVVLELAPRFQKVFPDLKVAALYGGSEDRDQFAQLTIATTHQLLRFYRAFDVMIVD
EVDAFPYSIDETLQYAVQQSRKPTSSLIYLTATPNKQWQKECRIGKWDFVTIPARYHRHPLPVPRFEWSGNWEKKLSKRK
LPPNIIKWVEARLASGKQALIFAPKITAMKKILTILLQLNPLFESVHAEDPDRKDKVMKLRNKNITILLTTTILERGVTI
PNIDVAVIGSEDRIFTESALVQIAGRAGRSAEYPSGDVTFFHYGKTEAMMSARSQIMMMNREGVKKGLIDV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=850577 LC048_RS00485 WP_226601795.1 111476..112891(+) (comFA) [Mesobacillus subterraneus strain KcN21-5]
ATGGAAGTTCCTCAGTCCCCCTTGTTATCCACAGATCGTTTTTTTCAATATAATCCCCAACTGCAAGAAACGCTGACGGG
GAAACAGCTTCTGCTTGAGGAATTGCCTGTTTCGAAGGAGGAAATACAGAAGCACCATGACCATGGGTATGTAATTTATC
GAAACGGTATCAATCGAGAGCGATTGTCCTGCACAAGATGCGGCACGACAGATCCTTCGTGGTTTGCGGAGTTTCCCTGT
GTGCGTTGTGGAAAAGTAGAGCTCTACTGCCGGAAGTGTTTGATGATGGGGAGGGTGAGTGAGTGTACGCTGCTTGTCAG
CTGGGCAGGTCCAATGCTGGACTTTGAAAAAATTTCAGAACCGCTTCGTTGGGGAGGGCAATTATCAGCAGGACAGAAGG
CTGCTTCCCGACGAGTTGCGGAAGCTGTGGGAAACTCAGCAGAGCTACTGGTATGGGCAGTTGCAGGGGCTGGTAAAACG
GAAGTGTTATTTGCCGGAATCGCCCAGGCTTTATCCACAGGCAAGCGGGTATGCGTGGCGACGCCAAGGACAGATGTGGT
TCTTGAGCTGGCTCCTCGTTTTCAAAAGGTTTTCCCGGATTTAAAGGTTGCCGCTCTCTATGGTGGGAGTGAAGACCGCG
ATCAATTTGCTCAGCTTACTATCGCGACAACGCATCAGCTGCTCCGCTTTTACAGGGCGTTCGACGTTATGATTGTGGAT
GAAGTCGATGCCTTCCCTTATTCCATTGATGAAACCCTTCAATATGCCGTGCAGCAATCCAGAAAACCAACTTCCTCCTT
GATTTATTTAACTGCAACCCCAAACAAACAATGGCAAAAAGAATGCCGGATAGGAAAATGGGATTTCGTCACTATACCTG
CTCGATACCACCGACATCCATTGCCTGTGCCTAGATTTGAATGGTCAGGGAACTGGGAGAAAAAGCTATCTAAGCGCAAA
CTTCCCCCGAATATCATTAAGTGGGTAGAAGCTAGATTAGCGAGCGGGAAACAAGCATTGATTTTTGCCCCGAAGATCAC
CGCCATGAAAAAAATCCTCACGATCCTTCTTCAGTTAAATCCTCTCTTTGAATCAGTCCATGCTGAAGATCCAGACAGAA
AAGATAAAGTAATGAAACTCAGAAATAAAAATATCACCATATTGCTCACCACCACTATTCTTGAACGGGGTGTTACCATC
CCTAATATCGATGTAGCTGTCATCGGCTCAGAGGACAGGATTTTTACCGAGAGCGCTCTTGTTCAGATTGCCGGGAGAGC
GGGGAGAAGTGCGGAATACCCGTCAGGTGATGTGACATTTTTTCATTATGGCAAAACAGAAGCGATGATGAGTGCTCGCA
GTCAAATTATGATGATGAACAGAGAAGGCGTAAAAAAAGGACTGATTGATGTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(128-275)

Helicase conserved C-terminal domain (Helicase_C)

(334-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.781

96.815

0.482