Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LC065_RS18855 Genome accession   NZ_CP129016
Coordinates   3673232..3675040 (-) Length   602 a.a.
NCBI ID   WP_226588122.1    Uniprot ID   -
Organism   Halobacillus litoralis strain SaN21-8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3668232..3680040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC065_RS18820 (LC065_18820) - 3668528..3669382 (-) 855 WP_226588140.1 RluA family pseudouridine synthase -
  LC065_RS18825 (LC065_18825) - 3669402..3670208 (-) 807 WP_160912035.1 NAD kinase -
  LC065_RS18830 (LC065_18830) - 3670225..3670863 (-) 639 WP_226588130.1 GTP pyrophosphokinase family protein -
  LC065_RS18835 (LC065_18835) - 3670997..3671581 (+) 585 WP_226588128.1 CYTH domain-containing protein -
  LC065_RS18840 (LC065_18840) - 3671636..3672034 (+) 399 WP_226588126.1 globin -
  LC065_RS18845 (LC065_18845) - 3672031..3672918 (+) 888 WP_306163629.1 ClpXP adapter SpxH family protein -
  LC065_RS18850 (LC065_18850) - 3673009..3673191 (+) 183 WP_226588124.1 hypothetical protein -
  LC065_RS18855 (LC065_18855) pepF 3673232..3675040 (-) 1809 WP_226588122.1 oligoendopeptidase F Regulator
  LC065_RS18860 (LC065_18860) - 3675106..3676269 (-) 1164 WP_226588120.1 competence protein CoiA -
  LC065_RS18865 (LC065_18865) mecA 3676456..3677154 (-) 699 WP_226588118.1 adaptor protein MecA -
  LC065_RS18870 (LC065_18870) - 3677450..3678115 (+) 666 WP_226588116.1 TerC family protein -
  LC065_RS18875 (LC065_18875) spxA 3678201..3678596 (-) 396 WP_008638741.1 transcriptional regulator SpxA -
  LC065_RS18880 (LC065_18880) - 3678880..3679470 (-) 591 WP_226588114.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69517.08 Da        Isoelectric Point: 4.6632

>NTDB_id=850567 LC065_RS18855 WP_226588122.1 3673232..3675040(-) (pepF) [Halobacillus litoralis strain SaN21-8]
MSSAKELPKREEIPVEKTWDLEAMFATDEEWYKELEEAKELLPELEKYQGKLGESAEQLYELLSFQDKISNKIGLLYTYA
HMRNDQDTTNAHYQEMNAKAENLYTKIASAMSFIVPEILALPEGKVKNFIESYEPLELYEHTLDEITRQRAHVLSEKEEK
LLAGFSEIGANPSQTFGALNNADLTFPTIKNEKGEEVDLTHGRYINFLKSDDREVRKSAFDAMYDTFGSFKNTFASTLGG
HVKKNNFNASVRKYDRARQAKLDSNNIPESVYDNLLEAVNERLPLLHRYAELRKEVLDLDEVHMYDMYTPLVKDAEMEIP
YEEAKELVTKGLEPLGEEYVNIVKEGFENRWIDVEENKGKRSGAYSSGHYGTNPYILMNWQDNVNNLFTLAHELGHSLHS
YYTHKNQPYRYGNYSIFVAEVASTCNEALLNDYMIKKTNSEKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHMQAQNGE
ALTAEKLTEIYYDLNKKYFGDNIVIDEKIGLEWARIPHFYMGYYVYQYSTGYAAAQALAGQILEEGEPAVERYKNFLKAG
SSDYPIEVLKQAGVDMTSKDPILSALDVFEEKLNEMEQLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=850567 LC065_RS18855 WP_226588122.1 3673232..3675040(-) (pepF) [Halobacillus litoralis strain SaN21-8]
ATGTCGTCTGCGAAAGAGCTACCCAAAAGAGAAGAAATACCTGTTGAGAAAACTTGGGACCTAGAAGCCATGTTTGCAAC
AGATGAAGAATGGTATAAAGAATTAGAAGAAGCAAAAGAGCTGCTTCCTGAATTAGAAAAGTACCAGGGGAAACTGGGGG
AATCAGCAGAACAGCTTTATGAGCTTCTTTCCTTTCAAGATAAAATTTCCAATAAAATAGGCTTGTTGTACACTTATGCC
CATATGAGAAATGACCAGGATACAACGAATGCACATTATCAGGAGATGAATGCAAAGGCTGAGAACTTATACACGAAGAT
TGCATCTGCTATGAGTTTCATCGTTCCGGAGATTCTTGCTCTTCCTGAAGGGAAAGTGAAAAACTTTATTGAATCTTATG
AGCCTCTAGAGCTATATGAACACACACTCGATGAGATTACACGCCAACGTGCTCATGTACTGAGTGAAAAGGAAGAGAAA
TTGTTGGCTGGATTCTCAGAGATTGGTGCCAACCCTTCACAAACTTTTGGCGCTTTAAATAATGCGGATCTCACTTTTCC
TACCATTAAAAACGAAAAAGGCGAAGAGGTTGATCTAACCCACGGGCGCTATATCAATTTTTTGAAGTCAGATGATCGTG
AAGTGCGGAAATCTGCATTTGATGCCATGTACGATACGTTTGGATCGTTCAAGAACACATTTGCATCAACACTCGGTGGA
CATGTGAAGAAGAACAACTTCAACGCGTCTGTAAGGAAGTATGACCGGGCACGACAGGCGAAACTAGACAGCAATAATAT
CCCGGAGTCGGTTTATGATAACCTGTTGGAAGCAGTAAACGAAAGACTACCTCTCTTACATCGCTATGCAGAGCTTCGTA
AAGAAGTGCTGGACCTTGATGAGGTTCACATGTATGACATGTATACACCACTTGTGAAAGATGCAGAGATGGAAATTCCT
TACGAAGAAGCTAAGGAATTGGTCACCAAAGGCCTGGAGCCGCTGGGTGAAGAATACGTCAATATAGTAAAAGAAGGGTT
TGAAAATCGCTGGATTGACGTTGAGGAGAATAAAGGGAAACGAAGCGGGGCTTATTCATCAGGTCATTATGGAACAAACC
CATATATCCTTATGAACTGGCAGGATAATGTAAACAATTTATTCACCTTAGCCCATGAACTCGGGCATTCTCTTCATAGC
TATTACACACATAAAAATCAGCCGTACCGTTATGGCAATTACTCTATTTTCGTGGCAGAGGTGGCTTCCACTTGTAATGA
AGCGCTTCTAAATGACTACATGATTAAGAAAACAAACAGTGAAAAAGAGAAGCTTTATTTGTTGAACAACTTTTTGGAAG
GATTCCGTGGGACGGTTTTCCGCCAGACGATGTTTGCTGAATTTGAACATGAGATTCATATGCAGGCACAGAATGGCGAA
GCTTTGACGGCTGAAAAACTGACGGAAATTTATTATGATCTCAACAAGAAATACTTCGGAGATAACATTGTGATTGATGA
AAAAATTGGTCTTGAATGGGCGCGTATCCCGCATTTCTATATGGGGTACTATGTCTATCAGTACTCTACCGGCTATGCAG
CTGCACAGGCATTAGCTGGACAGATCCTTGAAGAAGGAGAACCAGCGGTTGAACGCTACAAGAACTTCTTGAAGGCGGGT
AGCAGCGACTATCCGATTGAGGTGCTAAAGCAGGCCGGTGTCGATATGACATCGAAAGATCCAATCTTATCTGCGTTGGA
TGTTTTTGAAGAAAAATTAAACGAAATGGAACAGCTTCTGAAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.735

98.505

0.48