Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LC065_RS12035 Genome accession   NZ_CP129016
Coordinates   2377923..2379647 (+) Length   574 a.a.
NCBI ID   WP_226590813.1    Uniprot ID   -
Organism   Halobacillus litoralis strain SaN21-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372923..2384647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC065_RS12015 (LC065_12015) - 2374052..2374651 (+) 600 WP_089651773.1 hypothetical protein -
  LC065_RS12020 (LC065_12020) dxs 2374670..2376562 (+) 1893 WP_226590818.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LC065_RS12025 (LC065_12025) - 2376567..2377392 (+) 826 Protein_2333 TlyA family RNA methyltransferase -
  LC065_RS12030 (LC065_12030) ahrC 2377456..2377906 (+) 451 Protein_2334 transcriptional regulator AhrC/ArgR -
  LC065_RS12035 (LC065_12035) recN 2377923..2379647 (+) 1725 WP_226590813.1 DNA repair protein RecN Machinery gene
  LC065_RS12040 (LC065_12040) spoIVB 2379936..2381131 (+) 1196 Protein_2336 SpoIVB peptidase -
  LC065_RS12045 (LC065_12045) spo0A 2381373..2382152 (+) 780 WP_160914906.1 sporulation transcription factor Spo0A -
  LC065_RS12050 (LC065_12050) - 2382192..2382473 (-) 282 WP_226590810.1 hypothetical protein -
  LC065_RS12055 (LC065_12055) - 2382681..2384030 (+) 1350 WP_226590807.1 aspartate kinase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65169.69 Da        Isoelectric Point: 4.7234

>NTDB_id=850561 LC065_RS12035 WP_226590813.1 2377923..2379647(+) (recN) [Halobacillus litoralis strain SaN21-8]
MLTELSIRDFAIIDRISITFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSVEFVRHGTKKAEIEGLFTIGSNHPIHKVG
EEFGVDIDDDGMVVLQRTITHQGKSICRVNGKLVTLGIMKEFGHSLIDIHSQHETQSLMDPERHIELLDIFSGDDMKSSL
DEYQRVYDKYRVLKKRYKELSENEQEMAQRLDLLEFQLRELQEAEMQPLEDEELSEERKKLMNYEKIYQGIHDAYYSLYG
EQKGLDWLSHAMTSLESTADVDEELAKLSEEMSNSYYIIEELTFQLSNQMAALEFDPERLNQIESRLNELNRLKKKYGAT
VDDMLQYASKIEEEIDEIKNKDSHLSKMDSEIHELGQDAVMEAKALHDIRTSSATTLSEYIHEELRDLYLEKASFAVDIN
LKEGRESDPELEGHPVQLLPNGIDIVKFLITTNPGEPLKELHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIYGISEGSQVLCISHLPQVAAMADTHVRIEKRVDNDRTHTAAKELTYDEKADEISRMITGAELTETTVEH
ARELLLMADKHKKR

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=850561 LC065_RS12035 WP_226590813.1 2377923..2379647(+) (recN) [Halobacillus litoralis strain SaN21-8]
ATGCTAACAGAATTGTCTATTCGTGATTTTGCAATTATTGATCGAATTTCAATTACGTTCAAAGAAGGTCTCACCGTACT
CACAGGAGAAACAGGTGCGGGTAAATCGATCATCATCGATGCCATTCAACTGCTATCGGGTGGACGAGGGTCCGTCGAGT
TCGTGCGTCATGGAACAAAAAAAGCCGAAATTGAAGGATTGTTTACCATTGGAAGTAATCACCCTATTCATAAAGTGGGG
GAAGAATTTGGCGTTGATATTGATGATGATGGAATGGTCGTTCTGCAAAGGACCATTACGCATCAAGGGAAGAGCATTTG
CCGGGTGAACGGGAAACTAGTCACACTTGGAATTATGAAAGAATTCGGTCATTCTTTAATCGATATCCATAGCCAGCATG
AAACACAATCACTAATGGACCCAGAACGTCATATTGAACTCTTGGATATTTTTTCGGGTGACGATATGAAGTCCTCCTTG
GATGAATATCAACGGGTATATGATAAATACCGTGTACTGAAAAAACGTTACAAGGAACTGAGCGAAAATGAGCAGGAAAT
GGCTCAACGGTTGGATTTGCTTGAGTTTCAGCTCAGAGAACTGCAAGAGGCTGAAATGCAGCCCCTTGAGGATGAGGAAC
TTTCAGAAGAGCGAAAAAAGCTTATGAATTACGAAAAAATATATCAAGGAATCCATGATGCTTATTATTCCTTATATGGC
GAACAAAAAGGCCTGGACTGGTTGAGTCATGCTATGACATCCTTGGAAAGTACGGCAGACGTAGATGAGGAATTGGCCAA
ACTTTCAGAAGAAATGTCGAACTCTTACTATATTATTGAAGAACTGACCTTCCAATTGAGCAATCAAATGGCAGCACTTG
AATTTGATCCTGAACGTTTAAATCAGATTGAATCACGGTTAAACGAGTTGAATCGACTGAAGAAGAAGTATGGGGCAACG
GTCGATGATATGCTACAATACGCTTCGAAAATCGAAGAAGAGATTGACGAGATTAAAAATAAGGATTCTCATTTGAGTAA
AATGGATAGCGAAATTCATGAACTGGGTCAGGATGCTGTAATGGAGGCGAAAGCTCTTCATGACATTAGGACGAGTTCAG
CAACGACCTTATCTGAGTATATCCATGAAGAGTTAAGGGATTTATATTTAGAAAAAGCGTCTTTTGCAGTCGATATCAAC
TTGAAAGAAGGCCGGGAATCTGATCCTGAACTTGAAGGCCATCCCGTACAATTGCTCCCCAATGGAATAGACATCGTTAA
ATTTCTAATTACCACAAATCCAGGGGAACCATTAAAAGAATTACATAAAGTTGCATCAGGAGGAGAAATGTCGCGTATTA
TGCTTGCTTTGAAGCGCATCTTTTCACGACACCAAGGCGTTACGAGTGTGATTTTCGATGAGGTAGATACGGGTGTAAGC
GGTCGAGTAGCTCAAGCGATTGCTGAAAAAATCTACGGGATATCGGAAGGTTCACAAGTCTTGTGTATTTCACACCTTCC
ACAAGTAGCTGCTATGGCCGATACTCACGTAAGAATTGAAAAAAGAGTGGATAATGATCGAACTCATACAGCAGCAAAAG
AATTGACATATGATGAGAAAGCAGATGAAATTTCCAGAATGATTACAGGCGCAGAACTTACAGAAACAACGGTTGAACAT
GCGCGTGAACTGCTACTCATGGCAGATAAACATAAGAAACGGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.969

100

0.57