Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JSX26_RS19565 Genome accession   NZ_AP024402
Coordinates   4144018..4145457 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain KAM376     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4139018..4150457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSX26_RS19535 (KAM376_38110) dagF 4139294..4140034 (+) 741 WP_203763322.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  JSX26_RS19540 (KAM376_38120) - 4140141..4142045 (+) 1905 WP_203763326.1 BglG family transcription antiterminator -
  JSX26_RS19545 (KAM376_38130) npr 4142061..4142333 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  JSX26_RS19550 (KAM376_38140) rapZ 4142354..4143220 (-) 867 WP_010675869.1 RNase adapter RapZ -
  JSX26_RS19555 (KAM376_38150) ptsN 4143261..4143707 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JSX26_RS19560 (KAM376_38160) hpf 4143710..4143997 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  JSX26_RS19565 (KAM376_38170) rpoN/rpoN1 4144018..4145457 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  JSX26_RS19570 (KAM376_38180) lptB 4145523..4146248 (-) 726 WP_203763329.1 LPS export ABC transporter ATP-binding protein -
  JSX26_RS19575 (KAM376_38190) lptA 4146261..4146779 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  JSX26_RS19580 (KAM376_38200) lptC 4146766..4147326 (-) 561 WP_104454887.1 LPS export ABC transporter periplasmic protein LptC -
  JSX26_RS19585 (KAM376_38210) kdsC 4147323..4147877 (-) 555 WP_128296853.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JSX26_RS19590 (KAM376_38220) - 4147877..4148872 (-) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  JSX26_RS19595 (KAM376_38230) mlaF 4149079..4149879 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=85054 JSX26_RS19565 WP_039040474.1 4144018..4145457(-) (rpoN/rpoN1) [Aeromonas caviae strain KAM376]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=85054 JSX26_RS19565 WP_039040474.1 4144018..4145457(-) (rpoN/rpoN1) [Aeromonas caviae strain KAM376]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATAGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment