Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LC087_RS14315 Genome accession   NZ_CP129013
Coordinates   2801455..2802831 (+) Length   458 a.a.
NCBI ID   WP_226541686.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2796455..2807831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS14300 (LC087_14300) - 2796657..2797187 (+) 531 WP_306019667.1 UvrB/UvrC motif-containing protein -
  LC087_RS19755 - 2797188..2797305 (+) 118 Protein_2803 ATP--guanido phosphotransferase -
  LC087_RS14305 (LC087_14305) - 2797398..2798267 (+) 870 Protein_2804 protein arginine kinase -
  LC087_RS14310 (LC087_14310) clpC 2798264..2800700 (+) 2437 Protein_2805 ATP-dependent protease ATP-binding subunit ClpC -
  LC087_RS14315 (LC087_14315) radA 2801455..2802831 (+) 1377 WP_226541686.1 DNA repair protein RadA Machinery gene
  LC087_RS14320 (LC087_14320) disA 2802835..2803898 (+) 1064 Protein_2807 DNA integrity scanning diadenylate cyclase DisA -
  LC087_RS14325 (LC087_14325) - 2804138..2805232 (+) 1095 WP_226541690.1 PIN/TRAM domain-containing protein -
  LC087_RS14330 (LC087_14330) ispD 2805245..2805940 (+) 696 WP_226541692.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LC087_RS14335 (LC087_14335) ispF 2806079..2806556 (+) 478 Protein_2810 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50035.81 Da        Isoelectric Point: 8.4740

>NTDB_id=850534 LC087_RS14315 WP_226541686.1 2801455..2802831(+) (radA) [Bacillus carboniphilus strain SaN35-3]
MAKTKVKFICQSCGYESAKWMGKCPGCGQWNSMVEEKIKTNKTNRGVFQHSDNIKLSKPTSIMTIETKEEPRINTTINEL
NRVLGGGIVNGSLVLIGGDPGIGKSTLLLQACARLSETEKKVLYVSGEESVKQTKLRANRLSIATKNLFILAETDLENIT
KVIHEMNPDFIVIDSIQTIYHNQVTSAPGSVSQVRECTGELMRIAKTNGVPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMKETGLEEVLNPSEIFLEERSQGAAGSAVVASMEGTRPVLVEIQALIAPTSY
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAVDLAVAISIASSFKDLPTRSTDVFFGEVGLT
GEIRRVSRVEQRVQEAVKLGFKRIILPKANIGGWTKPAEVEVIGVVNISEALSHALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=850534 LC087_RS14315 WP_226541686.1 2801455..2802831(+) (radA) [Bacillus carboniphilus strain SaN35-3]
ATGGCGAAGACGAAAGTTAAATTTATATGTCAATCATGTGGGTATGAATCTGCAAAATGGATGGGGAAATGTCCTGGTTG
TGGGCAATGGAACTCAATGGTTGAAGAAAAAATAAAAACCAATAAAACGAATCGCGGGGTGTTTCAACATTCCGATAATA
TAAAGCTTAGTAAGCCTACCTCAATTATGACGATTGAAACAAAAGAAGAACCTAGAATTAATACAACCATAAATGAGTTA
AATCGAGTTTTAGGTGGAGGGATTGTAAATGGATCACTCGTACTAATTGGCGGTGACCCAGGAATCGGGAAATCGACCTT
ATTACTTCAGGCATGTGCAAGACTTTCTGAAACGGAAAAAAAGGTACTTTATGTTTCAGGAGAAGAGTCTGTCAAACAAA
CTAAGCTTAGGGCCAATCGTTTATCGATAGCAACAAAAAACTTGTTTATTCTAGCAGAAACAGATTTAGAAAATATCACT
AAAGTGATTCATGAAATGAATCCAGATTTTATTGTGATTGACTCCATTCAAACGATTTATCATAACCAAGTAACTTCAGC
TCCAGGAAGTGTTTCACAAGTTCGAGAATGTACAGGCGAACTAATGAGAATTGCGAAAACGAACGGAGTTCCGATCTTTA
TCGTTGGACACGTGACGAAGGAAGGATCCATTGCAGGCCCAAGGCTTTTAGAACATATGGTGGATACAGTTTTATATTTT
GAAGGAGAAAGGCATCATACTTTTCGTATTTTACGAGCAGTCAAGAACCGTTTTGGGTCAACAAATGAAATGGGTATTTT
CGAAATGAAAGAAACGGGATTAGAGGAAGTTCTTAATCCTTCGGAAATTTTTCTCGAGGAGCGTTCACAAGGTGCAGCTG
GTTCTGCCGTTGTGGCTTCAATGGAAGGTACTAGACCTGTATTAGTTGAAATTCAGGCATTAATCGCGCCCACTAGTTAT
GGTAACCCAAGAAGGATGGCGACGGGATTAGATCATAATCGAGTCTCTTTACTGATGGCTGTATTAGAAAAACGAGTAGG
ACTCTTACTACAAAATCAAGATGCTTATTTGAAAGTTGCCGGTGGAGTCAAACTGGATGAACCAGCAGTTGATTTAGCAG
TTGCTATTAGTATCGCATCAAGCTTTAAAGATCTTCCTACAAGGTCTACAGATGTCTTTTTTGGTGAAGTAGGATTAACG
GGTGAGATCAGGCGTGTATCTAGGGTTGAACAACGTGTGCAAGAAGCTGTGAAGCTAGGCTTTAAAAGAATTATTTTACC
TAAGGCAAATATAGGAGGATGGACAAAACCAGCAGAGGTTGAAGTTATAGGAGTTGTTAATATTTCAGAAGCTCTATCCC
ATGCGCTAGGAGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.253

100

0.764
  radA Streptococcus pneumoniae Rx1

61.978

99.345

0.616
  radA Streptococcus pneumoniae R6

61.978

99.345

0.616
  radA Streptococcus pneumoniae TIGR4

61.978

99.345

0.616
  radA Streptococcus pneumoniae D39

61.978

99.345

0.616
  radA Streptococcus mitis NCTC 12261

61.304

100

0.616
  radA Streptococcus mitis SK321

61.304

100

0.616