Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LC087_RS13960 Genome accession   NZ_CP129013
Coordinates   2731993..2732271 (-) Length   92 a.a.
NCBI ID   WP_226541922.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726993..2737271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS13925 (LC087_13925) - 2727314..2727646 (+) 333 WP_306019659.1 DUF327 family protein -
  LC087_RS19745 - 2727594..2727755 (+) 162 WP_371932603.1 DUF327 family protein -
  LC087_RS13930 (LC087_13930) holB 2727851..2728795 (+) 945 Protein_2744 DNA polymerase III subunit delta' -
  LC087_RS13935 (LC087_13935) - 2728798..2729628 (+) 831 WP_226541912.1 stage 0 sporulation family protein -
  LC087_RS13940 (LC087_13940) yabA 2729646..2730002 (+) 357 WP_226541914.1 DNA replication initiation control protein YabA -
  LC087_RS13945 (LC087_13945) - 2730061..2730801 (+) 741 WP_226541916.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LC087_RS13950 (LC087_13950) - 2730791..2731088 (+) 298 Protein_2748 GIY-YIG nuclease family protein -
  LC087_RS13955 (LC087_13955) rsmI 2731054..2731930 (+) 877 Protein_2749 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LC087_RS13960 (LC087_13960) abrB 2731993..2732271 (-) 279 WP_226541922.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LC087_RS13965 (LC087_13965) metG 2732726..2734666 (+) 1941 WP_226541924.1 methionine--tRNA ligase -
  LC087_RS13970 (LC087_13970) - 2735003..2735770 (+) 768 WP_226541926.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10299.89 Da        Isoelectric Point: 5.2063

>NTDB_id=850533 LC087_RS13960 WP_226541922.1 2731993..2732271(-) (abrB) [Bacillus carboniphilus strain SaN35-3]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDKIILKKYKANMTCHVTGEVSDDNFSLANGKLVLSREGAE
QILDEIKGRINE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=850533 LC087_RS13960 WP_226541922.1 2731993..2732271(-) (abrB) [Bacillus carboniphilus strain SaN35-3]
ATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGTGTGGTAATTCCTATCGAATTACGCCGTACACTTGG
AATTGCTGAAAAGGACGCATTAGAAATTTATGTGGATGATGATAAGATCATTCTTAAAAAATATAAAGCGAACATGACTT
GTCATGTTACTGGTGAAGTATCTGATGATAACTTCTCATTAGCAAACGGAAAGTTAGTTCTTTCTCGTGAAGGTGCAGAA
CAAATTTTAGATGAGATTAAAGGTCGTATTAACGAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.615

98.913

0.837