Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LC087_RS07700 Genome accession   NZ_CP129013
Coordinates   1503539..1504303 (-) Length   254 a.a.
NCBI ID   WP_226539877.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1498539..1509303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS07685 (LC087_07685) - 1499471..1500274 (-) 804 WP_226539881.1 pyruvate, water dikinase regulatory protein -
  LC087_RS07690 (LC087_07690) - 1500330..1500968 (-) 639 WP_226539879.1 helix-turn-helix transcriptional regulator -
  LC087_RS07695 (LC087_07695) - 1501642..1503024 (-) 1383 WP_226539878.1 glycine--tRNA ligase -
  LC087_RS07700 (LC087_07700) recO 1503539..1504303 (-) 765 WP_226539877.1 DNA repair protein RecO Machinery gene
  LC087_RS07705 (LC087_07705) - 1504376..1504519 (-) 144 WP_226539876.1 YqzL family protein -
  LC087_RS07710 (LC087_07710) era 1504703..1505611 (-) 909 WP_226539875.1 GTPase Era -
  LC087_RS07715 (LC087_07715) - 1505601..1506001 (-) 401 Protein_1532 cytidine deaminase -
  LC087_RS07720 (LC087_07720) - 1506151..1506534 (-) 384 WP_226540109.1 diacylglycerol kinase family protein -
  LC087_RS07725 (LC087_07725) ybeY 1506506..1506988 (-) 483 WP_226539873.1 rRNA maturation RNase YbeY -
  LC087_RS07730 (LC087_07730) - 1506985..1509148 (-) 2164 Protein_1535 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29595.21 Da        Isoelectric Point: 7.3956

>NTDB_id=850514 LC087_RS07700 WP_226539877.1 1503539..1504303(-) (recO) [Bacillus carboniphilus strain SaN35-3]
MIHKCEGYVVRSIKYGETNKIITIYSEQIGKVGLMARGANKPISRLSSLTQLFTYGSFLFHRSSKGLGTLEQGEIVHSMR
DIREDLFLTAYASFFAELLDKATESNEVNRHLFHLFHSVLTYLNEGIDEEVLMFIYEMKMLYFLGQAPQLSCCANCGEKE
GDYHFSIREGGLICHRCYDIDPYRFKISQKTVQLLRLFFFMDLARLGKVSLKVETKKELNNVIDEYYNEYTGIYLKSKQF
IKQMEKMQGYMKED

Nucleotide


Download         Length: 765 bp        

>NTDB_id=850514 LC087_RS07700 WP_226539877.1 1503539..1504303(-) (recO) [Bacillus carboniphilus strain SaN35-3]
TTGATTCATAAATGTGAAGGATATGTCGTTCGATCGATAAAATATGGAGAAACAAATAAAATTATAACGATTTACTCGGA
ACAAATAGGTAAAGTAGGGTTGATGGCAAGGGGGGCTAATAAACCAATTAGCCGCCTCTCATCTCTTACTCAGCTCTTTA
CCTATGGTTCTTTTTTATTTCACCGTTCTTCAAAAGGATTGGGAACGTTAGAACAAGGTGAGATCGTCCATTCGATGAGA
GATATTCGTGAGGATCTCTTTTTAACTGCTTATGCTTCTTTCTTTGCAGAACTTCTAGATAAAGCAACAGAATCCAATGA
AGTCAATAGACATTTGTTTCATTTGTTTCATTCAGTGCTTACATATTTAAATGAAGGAATTGATGAAGAAGTTTTAATGT
TTATTTATGAAATGAAGATGTTATATTTTTTAGGTCAAGCACCACAACTGTCTTGTTGTGCGAATTGTGGAGAAAAAGAA
GGGGACTACCATTTTTCCATAAGAGAAGGCGGACTCATTTGTCATCGTTGTTATGATATTGATCCATATCGTTTTAAAAT
TTCACAAAAAACAGTGCAACTTCTTAGATTGTTCTTCTTCATGGATTTAGCAAGGTTAGGTAAAGTATCGTTGAAAGTAG
AAACAAAAAAGGAGCTTAACAATGTAATCGATGAGTACTATAATGAGTACACAGGGATATATTTGAAGTCAAAGCAGTTT
ATAAAACAGATGGAGAAAATGCAAGGATATATGAAAGAAGATTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(83-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.906

100

0.559