Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LC087_RS06060 Genome accession   NZ_CP129013
Coordinates   1193224..1193820 (+) Length   198 a.a.
NCBI ID   WP_226538511.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188224..1198820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS06020 (LC087_06020) gpsB 1188361..1188666 (-) 306 WP_226538503.1 cell division regulator GpsB -
  LC087_RS06025 (LC087_06025) - 1188791..1189345 (-) 555 WP_226538504.1 DUF1273 domain-containing protein -
  LC087_RS06030 (LC087_06030) - 1189910..1190359 (+) 450 WP_226538505.1 Hsp20 family protein -
  LC087_RS06035 (LC087_06035) - 1190446..1190826 (-) 381 WP_226538506.1 YppG family protein -
  LC087_RS06040 (LC087_06040) - 1191016..1191162 (+) 147 WP_226538507.1 hypothetical protein -
  LC087_RS06045 (LC087_06045) - 1191237..1191611 (-) 375 WP_226538508.1 YppE family protein -
  LC087_RS06050 (LC087_06050) - 1191633..1191791 (-) 159 WP_226538509.1 hypothetical protein -
  LC087_RS06055 (LC087_06055) - 1192121..1193071 (-) 951 WP_226538510.1 DUF2515 family protein -
  LC087_RS06060 (LC087_06060) recU 1193224..1193820 (+) 597 WP_226538511.1 Holliday junction resolvase RecU Machinery gene
  LC087_RS06065 (LC087_06065) - 1193876..1195585 (+) 1710 WP_306020339.1 transglycosylase domain-containing protein -
  LC087_RS06070 (LC087_06070) - 1195686..1196414 (+) 729 WP_306020341.1 fibronectin type III domain-containing protein -
  LC087_RS06075 (LC087_06075) - 1196429..1196800 (-) 372 WP_226538676.1 GNAT family N-acetyltransferase -
  LC087_RS06080 (LC087_06080) - 1197035..1197538 (-) 504 WP_226538513.1 YpoC family protein -
  LC087_RS06085 (LC087_06085) nth 1197535..1198185 (-) 651 WP_226538514.1 endonuclease III -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23124.35 Da        Isoelectric Point: 9.5602

>NTDB_id=850509 LC087_RS06060 WP_226538511.1 1193224..1193820(+) (recU) [Bacillus carboniphilus strain SaN35-3]
MIFNYPNGKAYTNNSSLAKQPASNHRYSNRGMSLEEDINLTNQYYLQENIAVIHKKPTPVQIVDVHYPQRSRAVIKEAYF
KQASTTDYNGVYKGKYIDFEAKETKNKTSFPLQNIHQHQINHMESVVNHNGIAFMIIQFTSLEEVYFLPAIEIFPFWERK
LSGGRKSITIDEIRINATKIELGYHPRIDYIKVIKNMY

Nucleotide


Download         Length: 597 bp        

>NTDB_id=850509 LC087_RS06060 WP_226538511.1 1193224..1193820(+) (recU) [Bacillus carboniphilus strain SaN35-3]
ATGATCTTTAATTATCCTAATGGAAAAGCATATACAAATAACTCCTCTCTTGCTAAACAACCAGCTAGTAACCATCGATA
TAGTAATCGTGGGATGTCGTTAGAAGAGGATATTAATCTTACCAATCAATATTATTTACAAGAAAATATTGCGGTTATAC
ATAAAAAACCTACACCCGTCCAAATTGTGGATGTTCATTATCCACAAAGAAGCAGAGCCGTTATTAAGGAGGCTTATTTT
AAACAAGCCTCAACTACAGATTATAACGGTGTTTATAAAGGGAAGTACATTGATTTTGAAGCAAAAGAAACGAAAAATAA
AACATCGTTTCCCCTGCAAAATATTCATCAACACCAAATTAACCATATGGAGTCTGTAGTTAACCATAACGGGATCGCAT
TTATGATTATTCAATTTACCTCTTTAGAGGAAGTATATTTTTTACCAGCGATTGAGATCTTCCCATTTTGGGAACGAAAG
CTGTCGGGAGGACGTAAATCTATTACGATTGATGAGATTAGAATAAATGCAACAAAAATAGAGCTTGGCTATCACCCAAG
AATCGATTATATTAAAGTAATAAAAAATATGTATTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

61.809

100

0.621