Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LC087_RS03130 Genome accession   NZ_CP129013
Coordinates   613207..613482 (+) Length   91 a.a.
NCBI ID   WP_226539038.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 608207..618482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS03105 (LC087_03105) - 608386..608628 (+) 243 WP_226539033.1 YkuS family protein -
  LC087_RS03110 (LC087_03110) - 609068..609610 (+) 543 WP_226539034.1 peroxiredoxin -
  LC087_RS03115 (LC087_03115) - 609682..610137 (+) 456 WP_226539035.1 TlpA disulfide reductase family protein -
  LC087_RS03120 (LC087_03120) - 610461..611678 (+) 1218 WP_226539036.1 ATP-binding protein -
  LC087_RS03125 (LC087_03125) - 611774..612907 (+) 1134 WP_226539037.1 Ger(x)C family spore germination protein -
  LC087_RS03130 (LC087_03130) abrB 613207..613482 (+) 276 WP_226539038.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LC087_RS03135 (LC087_03135) - 613637..614107 (-) 471 WP_226539039.1 N-acetyltransferase -
  LC087_RS03140 (LC087_03140) - 614319..615957 (+) 1639 Protein_609 CoA-disulfide reductase -
  LC087_RS03145 (LC087_03145) - 616176..616436 (+) 261 WP_226539041.1 metal-sensitive transcriptional regulator -
  LC087_RS03150 (LC087_03150) - 616468..616911 (-) 444 WP_226539042.1 hypothetical protein -
  LC087_RS03155 (LC087_03155) - 616982..617551 (-) 570 WP_226539043.1 DUF2269 family protein -
  LC087_RS03160 (LC087_03160) - 617553..618140 (-) 588 WP_226539070.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10394.18 Da        Isoelectric Point: 6.3711

>NTDB_id=850505 LC087_RS03130 WP_226539038.1 613207..613482(+) (abrB) [Bacillus carboniphilus strain SaN35-3]
MKSTGIMRKVDELGRIVIPKELRRTFQINEGDPLEIFVDKEKIILQKYRPSKQCIVTGKISDDNIVLAEGNVVLSIEGAE
IIKEELEKRLN

Nucleotide


Download         Length: 276 bp        

>NTDB_id=850505 LC087_RS03130 WP_226539038.1 613207..613482(+) (abrB) [Bacillus carboniphilus strain SaN35-3]
ATGAAAAGTACAGGGATCATGAGAAAAGTTGATGAGCTAGGTCGAATTGTAATACCTAAAGAGCTTCGTAGAACATTTCA
AATTAACGAAGGGGATCCATTGGAGATTTTCGTTGATAAAGAAAAGATCATCTTACAAAAGTATAGACCATCAAAACAAT
GTATTGTAACTGGAAAAATTTCAGATGATAACATTGTCTTAGCAGAAGGAAATGTTGTTCTAAGTATAGAAGGGGCAGAA
ATCATTAAAGAAGAGCTTGAAAAAAGACTCAATTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(54-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

65.556

98.901

0.648