Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LC087_RS03005 Genome accession   NZ_CP129013
Coordinates   588440..588901 (-) Length   153 a.a.
NCBI ID   WP_226539013.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 583440..593901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS02980 (LC087_02980) - 583862..584410 (-) 549 WP_226539008.1 PadR family transcriptional regulator -
  LC087_RS02985 (LC087_02985) - 584515..585801 (-) 1287 WP_226539009.1 NCS2 family permease -
  LC087_RS02990 (LC087_02990) - 586141..587459 (+) 1319 Protein_578 MFS transporter -
  LC087_RS02995 (LC087_02995) - 587569..587706 (-) 138 WP_226539011.1 YjcZ family sporulation protein -
  LC087_RS03000 (LC087_03000) - 587790..587888 (-) 99 WP_226539012.1 YjcZ family sporulation protein -
  LC087_RS03005 (LC087_03005) kre 588440..588901 (-) 462 WP_226539013.1 YkyB family protein Regulator
  LC087_RS03010 (LC087_03010) - 589086..589400 (+) 315 WP_226539014.1 helix-turn-helix transcriptional regulator -
  LC087_RS03015 (LC087_03015) - 589940..591462 (+) 1523 Protein_583 hypothetical protein -
  LC087_RS03020 (LC087_03020) - 591512..592789 (-) 1278 WP_226539016.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17652.19 Da        Isoelectric Point: 10.2791

>NTDB_id=850504 LC087_RS03005 WP_226539013.1 588440..588901(-) (kre) [Bacillus carboniphilus strain SaN35-3]
MDDHYQDKRTNHSTDHIAEAIFTVNRHAKTAPDPKFLYLLKRKALIKLLKEGKASKKGLHYSNNPRFSQQSSDVLIEAGK
YYFHMPPTKEDFKNLPHLGKLSSSYRNPKSSLSLSIAKEILQNYVGLKDDHEKASSKKQKYEKPVFKKLGETY

Nucleotide


Download         Length: 462 bp        

>NTDB_id=850504 LC087_RS03005 WP_226539013.1 588440..588901(-) (kre) [Bacillus carboniphilus strain SaN35-3]
ATGGATGATCATTATCAAGACAAACGGACAAATCACTCTACAGATCATATTGCAGAGGCTATTTTTACAGTCAACCGACA
TGCGAAAACGGCTCCTGACCCAAAGTTTCTTTACCTTCTAAAAAGAAAAGCATTGATTAAGCTTTTAAAAGAAGGTAAAG
CCTCTAAAAAAGGCCTTCACTACTCTAATAACCCAAGATTTAGTCAGCAATCATCTGACGTACTTATTGAAGCAGGGAAA
TACTATTTTCATATGCCACCTACAAAAGAAGACTTTAAAAATTTACCTCATTTAGGAAAGTTATCCTCTTCTTATCGAAA
CCCAAAATCTTCTCTTTCCTTATCAATAGCAAAAGAGATACTCCAAAACTATGTAGGTTTAAAAGACGATCATGAAAAAG
CTTCTTCTAAAAAACAAAAATATGAGAAACCCGTATTTAAAAAATTAGGTGAGACTTACTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

61.438

100

0.614