Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LC087_RS01525 Genome accession   NZ_CP129013
Coordinates   297833..298786 (+) Length   317 a.a.
NCBI ID   WP_226538746.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 292833..303786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS01500 (LC087_01500) - 294006..294821 (-) 816 WP_226538741.1 undecaprenyl-diphosphate phosphatase -
  LC087_RS01505 (LC087_01505) - 295086..295265 (+) 180 WP_226538742.1 YjzC family protein -
  LC087_RS01510 (LC087_01510) - 295349..295534 (-) 186 WP_226538743.1 YjzD family protein -
  LC087_RS01515 (LC087_01515) - 295708..296484 (+) 777 WP_226538744.1 hypothetical protein -
  LC087_RS01520 (LC087_01520) - 296580..297434 (+) 855 WP_226538745.1 hypothetical protein -
  LC087_RS01525 (LC087_01525) med 297833..298786 (+) 954 WP_226538746.1 BMP family ABC transporter substrate-binding protein Regulator
  LC087_RS01530 (LC087_01530) comZ 298792..298980 (+) 189 WP_226538747.1 ComZ family protein Regulator
  LC087_RS01535 (LC087_01535) - 299013..299345 (-) 333 WP_226538748.1 hypothetical protein -
  LC087_RS01540 (LC087_01540) - 299998..300936 (+) 939 WP_226538749.1 beta-ketoacyl-ACP synthase III -
  LC087_RS01545 (LC087_01545) fabF 301054..302295 (+) 1242 WP_226538750.1 beta-ketoacyl-ACP synthase II -
  LC087_RS01550 (LC087_01550) - 302418..303182 (+) 765 WP_226539052.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35796.21 Da        Isoelectric Point: 4.1248

>NTDB_id=850500 LC087_RS01525 WP_226538746.1 297833..298786(+) (med) [Bacillus carboniphilus strain SaN35-3]
MKLRISLILLLLFSLLGCEQMQTNNLNKVGLLVYETVNDQVWGTKGYKGLLKIQSELGVDVDYKDQMNNESAIKQAVKEF
DEDGINLVFGHGVQYEDTFNSLSKQYPSMHFVFFNGDAQGENVTSLNFEAYSMGFFAGMIAAYMSETKQLGVIASKEWQQ
EVVGFKEGALFQDSNVKVDIEYTDDWDNVPVAQNRLDSLLQKQADVVYPAGDGYNVPVIERLKEEGKYAIGYITDQSVLG
EQTVLTSTVQHVDELYVLVAKRFQEGNLTSGNLTFGFEQEIIDLGEFSPLIDEDFIEKIENDIKRYKESGELPNEKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=850500 LC087_RS01525 WP_226538746.1 297833..298786(+) (med) [Bacillus carboniphilus strain SaN35-3]
ATGAAACTTCGAATTAGCCTTATTTTACTCCTTCTTTTTTCACTTCTTGGATGTGAGCAAATGCAAACAAATAACCTTAA
TAAGGTCGGTCTTCTTGTTTATGAAACTGTAAATGATCAAGTTTGGGGAACAAAAGGTTATAAGGGCTTGTTAAAAATAC
AGTCAGAACTAGGGGTAGATGTCGATTATAAAGATCAAATGAATAATGAGAGTGCGATTAAGCAAGCGGTGAAAGAATTT
GATGAGGATGGCATTAATCTAGTTTTTGGACATGGTGTTCAATATGAAGATACGTTCAATTCTTTAAGCAAACAATACCC
ATCGATGCATTTTGTGTTTTTTAATGGAGATGCGCAAGGAGAAAATGTAACCAGTTTAAATTTTGAAGCATATAGCATGG
GTTTTTTTGCTGGAATGATTGCTGCTTATATGTCTGAAACTAAGCAACTTGGGGTCATTGCTTCTAAAGAATGGCAACAA
GAGGTGGTTGGATTTAAAGAAGGGGCATTATTTCAAGATTCAAATGTTAAGGTAGACATAGAGTATACAGATGATTGGGA
TAATGTTCCGGTTGCTCAAAATAGGTTGGACTCATTACTTCAGAAACAAGCAGATGTTGTTTACCCTGCAGGTGATGGTT
ATAATGTTCCTGTAATTGAGAGGTTAAAAGAGGAAGGGAAATATGCAATTGGTTATATTACGGATCAAAGTGTTTTGGGA
GAACAAACAGTTTTAACTAGTACTGTTCAGCATGTAGATGAACTGTATGTTCTTGTAGCAAAACGTTTTCAAGAAGGAAA
TTTAACAAGTGGTAACTTAACCTTTGGTTTTGAACAAGAAATCATTGATTTAGGTGAGTTTAGTCCTTTGATTGATGAAG
ATTTTATTGAGAAAATAGAAAATGATATTAAAAGATATAAAGAATCAGGTGAGTTACCTAATGAAAAGGAGTGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

48.726

99.054

0.483