Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P0182_RS16860 Genome accession   NZ_CP129007
Coordinates   3285137..3285559 (+) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia aryabhattai strain AYG1023     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3280137..3290559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0182_RS16835 (P0182_16825) - 3280376..3281197 (+) 822 WP_029322903.1 sensor histidine kinase -
  P0182_RS16840 (P0182_16830) - 3281198..3281839 (+) 642 WP_057273553.1 response regulator transcription factor -
  P0182_RS16845 (P0182_16835) - 3282015..3283007 (+) 993 WP_098277671.1 glycerophosphodiester phosphodiesterase family protein -
  P0182_RS16850 (P0182_16840) - 3283120..3284502 (+) 1383 WP_098277672.1 PepSY domain-containing protein -
  P0182_RS16855 (P0182_16845) - 3284532..3284996 (+) 465 WP_029322913.1 FixH family protein -
  P0182_RS16860 (P0182_16850) nucA/comI 3285137..3285559 (+) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P0182_RS16865 (P0182_16855) - 3285713..3286066 (+) 354 WP_234014945.1 DUF1516 family protein -
  P0182_RS16870 (P0182_16860) - 3286107..3286700 (-) 594 WP_013057951.1 hypothetical protein -
  P0182_RS16875 (P0182_16865) - 3286856..3287512 (-) 657 WP_013057952.1 TetR/AcrR family transcriptional regulator -
  P0182_RS16880 (P0182_16870) - 3287536..3288816 (-) 1281 WP_256995826.1 glycosyltransferase -
  P0182_RS16885 (P0182_16875) - 3289114..3289659 (+) 546 WP_057273558.1 GNAT family N-acetyltransferase -
  P0182_RS16890 (P0182_16880) - 3289959..3290444 (-) 486 WP_053487488.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=850468 P0182_RS16860 WP_013057949.1 3285137..3285559(+) (nucA/comI) [Priestia aryabhattai strain AYG1023]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=850468 P0182_RS16860 WP_013057949.1 3285137..3285559(+) (nucA/comI) [Priestia aryabhattai strain AYG1023]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507