Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QTA68_RS26475 Genome accession   NZ_CP129005
Coordinates   5164121..5165470 (-) Length   449 a.a.
NCBI ID   WP_290102031.1    Uniprot ID   -
Organism   Bacillus cereus strain lycx     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5159121..5170470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTA68_RS26440 (QTA68_26440) - 5159206..5159901 (-) 696 WP_048558322.1 hypothetical protein -
  QTA68_RS26445 (QTA68_26445) - 5159888..5160676 (-) 789 WP_048558321.1 hypothetical protein -
  QTA68_RS26450 (QTA68_26450) - 5160709..5161278 (-) 570 WP_048558320.1 hypothetical protein -
  QTA68_RS26455 (QTA68_26455) - 5161382..5161855 (-) 474 WP_048558319.1 hypothetical protein -
  QTA68_RS26460 (QTA68_26460) raiA 5162228..5162770 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  QTA68_RS26465 (QTA68_26465) cspC 5163093..5163290 (-) 198 WP_001990088.1 cold shock protein CspC -
  QTA68_RS26470 (QTA68_26470) - 5163417..5164121 (-) 705 WP_033666421.1 ComF family protein -
  QTA68_RS26475 (QTA68_26475) comFA 5164121..5165470 (-) 1350 WP_290102031.1 ATP-dependent helicase ComFA Machinery gene
  QTA68_RS26480 (QTA68_26480) - 5165598..5167027 (-) 1430 Protein_5156 NlpC/P60 family protein -
  QTA68_RS26485 (QTA68_26485) - 5167176..5167490 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  QTA68_RS26490 (QTA68_26490) - 5167663..5168505 (-) 843 WP_000684725.1 DegV family protein -
  QTA68_RS26495 (QTA68_26495) - 5168742..5169377 (+) 636 WP_000926672.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51033.88 Da        Isoelectric Point: 10.0540

>NTDB_id=850433 QTA68_RS26475 WP_290102031.1 5164121..5165470(-) (comFA) [Bacillus cereus strain lycx]
MLAGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKASKYVCQRCGNIDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMHLNKKYPVFL
FVPHVRYIEEISSLLKSLRNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTKAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=850433 QTA68_RS26475 WP_290102031.1 5164121..5165470(-) (comFA) [Bacillus cereus strain lycx]
ATGCTAGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTCTGTGTACAAGGTGTAAAAAAGAAGGCTTCTAAATATGTATGTCAGCGCTGTGGAAATATAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTATTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGCACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCGTAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAAAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.81

98.441

0.51